Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BV903_RS24565 Genome accession   NZ_CP110813
Coordinates   5958232..5959758 (+) Length   508 a.a.
NCBI ID   WP_078997301.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain B25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5953232..5964758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV903_RS24540 (BV903_024540) - 5954724..5955707 (-) 984 WP_267272183.1 YeiH family protein -
  BV903_RS24545 (BV903_024545) - 5955889..5956800 (+) 912 WP_078997304.1 LysR family transcriptional regulator -
  BV903_RS24550 (BV903_024550) - 5956834..5957160 (-) 327 WP_078997303.1 hypothetical protein -
  BV903_RS24555 (BV903_024555) - 5957272..5957610 (-) 339 WP_078997302.1 P-II family nitrogen regulator -
  BV903_RS24560 (BV903_024560) - 5957943..5958221 (+) 279 WP_057945892.1 accessory factor UbiK family protein -
  BV903_RS24565 (BV903_024565) comM 5958232..5959758 (+) 1527 WP_078997301.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BV903_RS24570 (BV903_024570) - 5960094..5960924 (+) 831 WP_078997300.1 AraC family transcriptional regulator -
  BV903_RS24575 (BV903_024575) - 5961354..5961509 (+) 156 WP_168356157.1 hypothetical protein -
  BV903_RS24580 (BV903_024580) - 5961515..5962396 (+) 882 WP_078997299.1 alpha/beta hydrolase -
  BV903_RS24585 (BV903_024585) - 5962530..5963540 (+) 1011 WP_078997298.1 alpha/beta fold hydrolase -
  BV903_RS24590 (BV903_024590) - 5963586..5964656 (-) 1071 WP_078997297.1 nitronate monooxygenase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54050.76 Da        Isoelectric Point: 8.5842

>NTDB_id=756421 BV903_RS24565 WP_078997301.1 5958232..5959758(+) (comM) [Lysobacter enzymogenes strain B25]
MNLALVHSRARTGVRAPAVRVEVHLGGGLPCMNIVGLPEAAVREAKDRVRAAIASAQYEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQLPLPALADCEFLGELGLTGELRAIDGVLPAALAAAEAGRRLVVPAGNGAEAALASRVEARTARTL
SEVCAMLCERAPLPRAVAPPLARAPELDMRDVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEDE
ALETAAIASVGGGGHGRALDPSRWRQRPFRAPHHTASAVALVGGGADPRPGEISLAHQGVLFLDELPEWERRALEVLREP
LESGAVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSARCRCTEDIIRRYRARISGPLLDRIDLHIEVPRLPPAALRP
DQPEGECSAAIRERVTAARQRQAERSGRTNSRLDQAQTNQHCRLSERDQALLERAVDGLQLSARSMHRILRVARTIADLA
DSANIGTAHLTEAIGYRRADRDSAARAS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=756421 BV903_RS24565 WP_078997301.1 5958232..5959758(+) (comM) [Lysobacter enzymogenes strain B25]
ATGAACCTGGCGCTCGTGCACAGCCGTGCGCGAACGGGGGTGCGTGCGCCGGCGGTACGCGTCGAAGTGCATCTGGGCGG
CGGCCTGCCGTGCATGAACATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAGGCCAAGGACCGGGTGCGCGCGGCGATCG
CCTCGGCGCAGTATGAATTCCCGCAACGACGCATCACCGTCAACCTCGCGCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TACGACCTCGCCATCGCGCTCGGCATCCTCGCCGCGAGCGGACAGCTGCCACTGCCGGCGCTCGCCGATTGCGAGTTCCT
CGGCGAGCTCGGCCTCACCGGCGAGCTACGCGCGATCGACGGCGTGCTGCCGGCGGCGCTGGCCGCGGCCGAGGCCGGCC
GCCGGCTGGTGGTGCCGGCCGGCAACGGCGCCGAAGCGGCGCTGGCCAGCCGGGTCGAGGCGCGCACCGCGCGCACGCTG
TCGGAGGTCTGCGCGATGCTGTGCGAACGCGCGCCGCTGCCGCGCGCCGTGGCTCCGCCGCTGGCGCGCGCGCCGGAACT
GGACATGCGCGACGTGCGCGGCCAGGCCCAGGCGCGGCGCGCGCTGGAGATCGCCGCGGCCGGCGGCCACCACCTGCTGT
TGATCGGCCCGCCCGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCCGAGGCCAGCGAAGACGAA
GCGCTGGAAACCGCGGCGATCGCCTCGGTCGGCGGCGGCGGCCACGGCCGCGCGCTGGACCCGTCGCGCTGGCGCCAGCG
CCCGTTCCGCGCTCCGCACCACACCGCCAGCGCGGTCGCGCTGGTCGGCGGCGGCGCCGATCCGCGGCCCGGCGAAATCT
CGCTGGCGCACCAGGGCGTGCTGTTCCTCGATGAGCTGCCCGAATGGGAGCGGCGCGCGCTGGAAGTGCTGCGCGAACCG
TTGGAGTCGGGTGCGGTCACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCGGCGCGCTTCCAGTTGGTCGCGGCGAT
GAATCCCTGCCCCTGCGGCTGGGCCGGCGACAGCAGCGCGCGCTGCCGCTGCACCGAGGACATCATCCGCCGCTACCGCG
CGCGCATCTCCGGCCCGCTGTTGGACCGCATCGACCTGCACATCGAAGTGCCGCGGCTGCCGCCGGCGGCGCTGCGCCCC
GACCAGCCCGAGGGCGAATGCAGCGCGGCGATCCGCGAGCGCGTGACCGCGGCGCGGCAACGCCAGGCCGAGCGCAGCGG
CCGGACCAATTCGCGCCTGGACCAGGCCCAGACCAACCAGCATTGCCGCCTGAGCGAACGCGACCAGGCGTTGCTGGAAC
GCGCGGTGGACGGACTGCAGCTGTCGGCGCGCTCGATGCACCGGATCTTGCGGGTCGCGCGCACGATCGCCGATCTGGCC
GACAGCGCCAACATCGGCACCGCGCATTTGACCGAAGCCATCGGTTATCGGCGCGCGGATCGCGACAGCGCCGCGCGAGC
GTCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.274

99.016

0.537
  comM Vibrio campbellii strain DS40M4

52.883

99.016

0.524
  comM Glaesserella parasuis strain SC1401

52.165

100

0.522
  comM Haemophilus influenzae Rd KW20

52.286

99.016

0.518
  comM Legionella pneumophila str. Paris

51.297

98.622

0.506
  comM Legionella pneumophila strain ERS1305867

51.297

98.622

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.401

100

0.457