Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BBP27_RS10470 Genome accession   NZ_CP110721
Coordinates   2196994..2199126 (+) Length   710 a.a.
NCBI ID   WP_188211923.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2191994..2204126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS10450 pilM 2194025..2195116 (+) 1092 WP_070850270.1 type IV pilus assembly protein PilM -
  BBP27_RS10455 pilN 2195121..2195744 (+) 624 WP_036492821.1 PilN domain-containing protein Machinery gene
  BBP27_RS10460 pilO 2195744..2196415 (+) 672 WP_049347905.1 type 4a pilus biogenesis protein PilO -
  BBP27_RS10465 pilP 2196431..2196973 (+) 543 WP_049347906.1 pilus assembly protein PilP Machinery gene
  BBP27_RS10470 pilQ 2196994..2199126 (+) 2133 WP_188211923.1 type IV pilus secretin PilQ Machinery gene
  BBP27_RS10475 - 2199257..2199769 (+) 513 WP_283255489.1 shikimate kinase -
  BBP27_RS10480 aroB 2199792..2200871 (+) 1080 WP_188211922.1 3-dehydroquinate synthase -
  BBP27_RS10485 - 2200999..2202312 (-) 1314 WP_188211921.1 ATP-binding protein -
  BBP27_RS10490 - 2202342..2203019 (-) 678 WP_070713642.1 response regulator -
  BBP27_RS10495 - 2203165..2203731 (-) 567 WP_188211920.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77949.12 Da        Isoelectric Point: 9.6326

>NTDB_id=756024 BBP27_RS10470 WP_188211923.1 2196994..2199126(+) (pilQ) [Neisseria sp. RH3002v2g]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNVAVVNERAATPSTARATQAYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNQNVNKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
TAWGSNWSNAQANHNTNASFNRGDVGYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=756024 BBP27_RS10470 WP_188211923.1 2196994..2199126(+) (pilQ) [Neisseria sp. RH3002v2g]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGACGTCACCACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATTGCATTGGATTTTGCCAACACCAATATCCGTTTGCCCCAGCCTGTTTTG
GAATATGCCGACCCCTTGCTGAATCAAATTACTGCGGCGCAAAACAACGACCGCGCACGCGTGGTGTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAAATTCGCGGCAACGAAGTTTGGGTATTCGTAAACGAATCTACTGACCAAACCAATGTGG
CCGTTGTAAATGAACGTGCGGCTACACCGTCTACCGCGCGCGCTACTCAGGCTTATCAAGCCGTTTCGGCCGCCAATATC
GATTTCCGCAAAGGCGCACGCAATTCCGGCATTATTGAACTGTCTGCCCCGGGTTTCAGCGGACAGCCGGACATTAAACA
GCAACGCGACCGCGTGGTTGTAACCTTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCCGACT
TCAATACGCCTGTACAAAACGTTACGCTCAAACGTATCGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCCTCTTCCGGCCGTTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCGGCGG
CTTGAACCAAAATGTGAATAAATCGTTTAAAGGCCGTAAAATTTCCTTGGACTTCCAAGATGTAGAAGTCCGTACCATTT
TGCAGATTTTGGCGAAAGAGTCCGGCGTGAATATTGTTGCCAGCGATACCGTTAAAGGTACCATGACTTTGTCCCTGAAA
GATGTACCTTGGGATCAGGCATTGGACTTGGTCATGCAGGCGCGCAATTTGGATATGCGCCGTCAAGGCAACATCATCAA
TATCGCCCCCCGCGATGAATTGTTGGCAAAAGACAAAGCCTTCTTGCAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAACGTGGAAGAATTCCGCAAAATTTTGCGTTTGGAGGAATACGACAGC
AATAATTCCAATACCCGCAACACTCTGCTGAGCAACCGAGGCAGCGCCTTAATCGATCCGGCCACCAATACGCTGATCGT
AACCGACAACCGCGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGACGTTCCGACCCGTCAAGTGATGGTTG
AAGCGCGCATTGTCGAAGCAGAAGATACCTTCTTCCGCAATTTGGGCGTTAAATTCGGTTCCGGTGGCGCGAGCGGCCGT
ACGGCATGGGGCAGCAACTGGAGCAATGCGCAAGCCAACCATAACACCAATGCTTCGTTTAACCGTGGTGATGTCGGCTA
TCCTACTTGGTCTTTAGATCCGAACGTCAGCCTGCCGACCGCAGCTGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGCGCATTGGGTTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGTAAAGAAGCCAAAATTGAATCCGGTACGGAAATCCCTTACCAAGAAGCATCTTCCAGCGGTGCGACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTAGATTCTCTGACAACCAAGTGTATCAACACCAAGCACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGTACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
CCCTGTTTTGGGCGATATTCCCGTTGTCGGCAATTTGTTCAAATCACGCGGCAAGCGTGAAAACCGCCGTGAGCTGTTGA
TTTTCATCACGCCGCGCATTATGGATAATGTGGGTAACAATCTGCGTTATTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(303-350)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

AMIN domain (AMIN)

(38-115)

Bacterial type II and III secretion system protein (Secretin)

(545-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

64.586

100

0.67
  pilQ Neisseria meningitidis M1080

60.819

100

0.669
  pilQ Neisseria meningitidis MC58

67.794

79.155

0.537