Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   BBP27_RS10465 Genome accession   NZ_CP110721
Coordinates   2196431..2196973 (+) Length   180 a.a.
NCBI ID   WP_049347906.1    Uniprot ID   A0A9X9SN29
Organism   Neisseria sp. RH3002v2g     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2191431..2201973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS10445 - 2191476..2193872 (-) 2397 WP_188211924.1 penicillin-binding protein 1A -
  BBP27_RS10450 pilM 2194025..2195116 (+) 1092 WP_070850270.1 type IV pilus assembly protein PilM -
  BBP27_RS10455 pilN 2195121..2195744 (+) 624 WP_036492821.1 PilN domain-containing protein Machinery gene
  BBP27_RS10460 pilO 2195744..2196415 (+) 672 WP_049347905.1 type 4a pilus biogenesis protein PilO -
  BBP27_RS10465 pilP 2196431..2196973 (+) 543 WP_049347906.1 pilus assembly protein PilP Machinery gene
  BBP27_RS10470 pilQ 2196994..2199126 (+) 2133 WP_188211923.1 type IV pilus secretin PilQ Machinery gene
  BBP27_RS10475 - 2199257..2199769 (+) 513 WP_283255489.1 shikimate kinase -
  BBP27_RS10480 aroB 2199792..2200871 (+) 1080 WP_188211922.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20029.48 Da        Isoelectric Point: 5.0186

>NTDB_id=756023 BBP27_RS10465 WP_049347906.1 2196431..2196973(+) (pilP) [Neisseria sp. RH3002v2g]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYNPPNFKGLNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSDSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=756023 BBP27_RS10465 WP_049347906.1 2196431..2196973(+) (pilP) [Neisseria sp. RH3002v2g]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGCACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCGAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCCAAGCCGTATAATC
CTCCAAATTTTAAAGGCTTGAATGCGTTTGATTCACGCCGTTTGGATACTGCCCCTAAAGGCGGTAATGCGCCGGATGTA
AACCGTCCGAAAGAAACCTTGGAAGCCTTCAGTCTGGAAAACATGGCTTTTGTCGGAACGCTTCAAAGCGGTGGTAAAGT
TTCTGGATTTATCAAAGTCAACGACCATGTTTATACCGTTTATCCCGGAAATTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACCGAAGATAAAATTATCCTGACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCCGAA
TTGCCGTTGAGCAGTAAAGAGGCAGATTCTTCCGATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60

94.444

0.567