Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BBP27_RS10455 Genome accession   NZ_CP110721
Coordinates   2195121..2195744 (+) Length   207 a.a.
NCBI ID   WP_036492821.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2190121..2200744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS10440 - 2190579..2191415 (-) 837 WP_188211925.1 PHP domain-containing protein -
  BBP27_RS10445 - 2191476..2193872 (-) 2397 WP_188211924.1 penicillin-binding protein 1A -
  BBP27_RS10450 pilM 2194025..2195116 (+) 1092 WP_070850270.1 type IV pilus assembly protein PilM -
  BBP27_RS10455 pilN 2195121..2195744 (+) 624 WP_036492821.1 PilN domain-containing protein Machinery gene
  BBP27_RS10460 pilO 2195744..2196415 (+) 672 WP_049347905.1 type 4a pilus biogenesis protein PilO -
  BBP27_RS10465 pilP 2196431..2196973 (+) 543 WP_049347906.1 pilus assembly protein PilP Machinery gene
  BBP27_RS10470 pilQ 2196994..2199126 (+) 2133 WP_188211923.1 type IV pilus secretin PilQ Machinery gene
  BBP27_RS10475 - 2199257..2199769 (+) 513 WP_283255489.1 shikimate kinase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23087.30 Da        Isoelectric Point: 4.7171

>NTDB_id=756022 BBP27_RS10455 WP_036492821.1 2195121..2195744(+) (pilN) [Neisseria sp. RH3002v2g]
MIELTRINLLPYREEIKQRKQQQFKVLMLGAFAVGLGLAAATYLGIDNAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNTLTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=756022 BBP27_RS10455 WP_036492821.1 2195121..2195744(+) (pilN) [Neisseria sp. RH3002v2g]
ATGATTGAATTAACCAGAATCAACCTTCTCCCGTATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAGTATT
GATGCTTGGCGCTTTTGCTGTGGGTTTGGGCTTGGCGGCCGCAACTTATCTCGGCATTGACAACGCCATCAGCAATCAAG
AAGGGCGCAACAACTTCCTGCAAACCGAAATCGACAGACTCGATAGGGAATTAGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCTAAAAAGCTGAAAGTGGAAGAATTGCAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATACGCTTACGCCCGATAATACTTATTTGACCGCGTTGGAAGCCGAAAGCCCGACCAGCTATAAAATCAGCGGCC
ATGCCATCAGCGACAATAAAATTGCTGTTATGATGCGCTCCCTGCCGAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAATTACCAAGAATTTACTTTGAAATCTTCAATCAACCAGGTGAATACGCCGGCTCCTGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCCGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.853

95.169

0.541