Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ONZ54_RS21820 Genome accession   NZ_CP110645
Coordinates   4684549..4686063 (+) Length   504 a.a.
NCBI ID   WP_011898225.1    Uniprot ID   A4SHE5
Organism   Aeromonas salmonicida strain AS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4679549..4691063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ54_RS21805 (ONZ54_21815) - 4681277..4682218 (-) 942 WP_271787146.1 branched-chain amino acid transaminase -
  ONZ54_RS21810 (ONZ54_21820) ilvM 4682231..4682521 (-) 291 WP_271787147.1 acetolactate synthase 2 small subunit -
  ONZ54_RS21815 (ONZ54_21825) ilvG 4682518..4684164 (-) 1647 WP_271787148.1 acetolactate synthase 2 catalytic subunit -
  ONZ54_RS21820 (ONZ54_21830) comM 4684549..4686063 (+) 1515 WP_011898225.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ONZ54_RS21825 (ONZ54_21835) - 4686200..4687099 (+) 900 WP_271787149.1 acyltransferase -
  ONZ54_RS21830 (ONZ54_21840) - 4687258..4687755 (-) 498 WP_087756887.1 DUF523 domain-containing protein -
  ONZ54_RS21835 (ONZ54_21845) - 4687752..4688402 (-) 651 WP_087756886.1 NUDIX hydrolase -
  ONZ54_RS21840 (ONZ54_21850) - 4688477..4689112 (+) 636 WP_169047058.1 nicotinamidase -
  ONZ54_RS21845 (ONZ54_21855) pncB 4689202..4690380 (+) 1179 WP_021138499.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54679.59 Da        Isoelectric Point: 7.4493

>NTDB_id=755634 ONZ54_RS21820 WP_011898225.1 4684549..4686063(+) (comM) [Aeromonas salmonicida strain AS3]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKDHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=755634 ONZ54_RS21820 WP_011898225.1 4684549..4686063(+) (comM) [Aeromonas salmonicida strain AS3]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGACCTGCCAAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCTGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCGGAAGCCTCCCTCATTCAGGACGCCGAGGTGCGTACCGCCCACCAACTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCTCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGACCGCCCGGTACCGGCAAGAGCATGCTGGCTAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGGCCCTATCG
CACGCCCCATCACAGTGCCTCCGCCGTGGCCCTGGTGGGCGGTGGCAGCCATCCCAGACCCGGCGAAATATCCTTGGCCC
ACAACGGGGTACTCTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATACTTCGCTATCTTGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGAATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGCCTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATA
GAGAAGGATCATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4SHE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466