Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OKW98_RS27215 Genome accession   NZ_CP110644
Coordinates   6159087..6160151 (-) Length   354 a.a.
NCBI ID   WP_265387451.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6154087..6165151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS27190 (OKW98_27195) aroK 6154698..6155216 (-) 519 WP_065986620.1 shikimate kinase AroK -
  OKW98_RS27195 (OKW98_27200) pilQ 6155221..6157299 (-) 2079 WP_265387447.1 type IV pilus secretin PilQ Machinery gene
  OKW98_RS27200 (OKW98_27205) - 6157353..6157880 (-) 528 WP_265387448.1 pilus assembly protein PilP -
  OKW98_RS27205 (OKW98_27210) pilO 6157877..6158524 (-) 648 WP_265387449.1 type 4a pilus biogenesis protein PilO -
  OKW98_RS27210 (OKW98_27215) - 6158521..6159087 (-) 567 WP_265387450.1 PilN domain-containing protein -
  OKW98_RS27215 (OKW98_27220) pilM 6159087..6160151 (-) 1065 WP_265387451.1 pilus assembly protein PilM Machinery gene
  OKW98_RS27220 (OKW98_27225) - 6160361..6162835 (+) 2475 WP_416148557.1 penicillin-binding protein 1A -
  OKW98_RS27225 (OKW98_27230) - 6163075..6164343 (-) 1269 WP_265387453.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38161.67 Da        Isoelectric Point: 4.6363

>NTDB_id=755608 OKW98_RS27215 WP_265387451.1 6159087..6160151(-) (pilM) [Pseudomonas sp. KU26590]
MFELFSKKANTLLGIDISSTSVKLLELSRSGNRYKVESYAVEPLPANAVVEKNIAELEGVGSALTRLLVKAKSNVKIAAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLEEVAIDFEVQGYSARNPERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLSAQLGQDHEQLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLSV
SEAGLAKKQGGLPDDYVTEVLQPFKDAVVQQVSRSLQFFFAAGQYNRVDYIMLAGGTASISGLDRLIQERLGTPTLVANP
FADMALSAKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=755608 OKW98_RS27215 WP_265387451.1 6159087..6160151(-) (pilM) [Pseudomonas sp. KU26590]
GTGTTCGAACTCTTCAGTAAGAAGGCCAACACCCTTCTGGGGATCGATATTAGCTCCACCTCGGTCAAGCTCCTGGAGCT
AAGTCGTTCCGGCAACCGTTACAAGGTCGAGTCTTATGCGGTCGAGCCGCTGCCCGCCAACGCAGTGGTCGAAAAAAACA
TCGCGGAGCTCGAAGGTGTCGGCAGTGCTTTGACGCGTCTGCTGGTAAAAGCCAAAAGTAACGTCAAAATCGCGGCGGTT
GCTGTCGCAGGTTCAGCCGTTATCACCAAGACCATCGAGATGGACGCAGGCCTTTCCGACGACGAGATGGAAAACCAGCT
CAAAATCGAGGCCGATCAGTACATCCCGTATCCGCTTGAAGAAGTCGCCATCGATTTCGAAGTTCAGGGCTATTCCGCGC
GCAACCCCGAGCGTGTCGAAGTGCTGCTGGCCGCCTGCCGCAAGGAAAACGTCGAGGTGCGCGAGGCCGCACTGGCACTG
GCCGGGCTGACTGCCCGCGTGGTCGATGTCGAAGCCTACGCGCTGGAGCGCTCGTTCGGTCTGTTGTCTGCGCAGCTGGG
TCAGGACCACGAGCAGTTGACGGTCGCCGTCATCGACATTGGCGCGACCATGACAACCCTCAGCGTGCTGCACAACGGCC
GCATCATCTATACCCGTGAACAATTATTTGGCGGTCGCCAGCTCACCGAGGAAATCCAGCGTCGTTACGGTTTGTCCGTG
AGCGAGGCCGGGCTCGCGAAAAAGCAGGGCGGGCTCCCCGACGACTACGTCACGGAAGTGCTGCAGCCATTCAAGGACGC
CGTGGTGCAGCAGGTGTCCCGCTCGCTGCAGTTCTTCTTCGCAGCCGGTCAGTACAACCGCGTCGACTACATCATGCTGG
CCGGGGGCACGGCCTCCATTTCGGGTCTTGATCGCTTGATTCAGGAACGCCTTGGCACGCCGACGCTGGTGGCGAACCCT
TTCGCTGACATGGCCCTGAGCGCCAAGGTCAACGCCGGCGCTCTCGCCAGCGATGCTCCCGCACTGATGATCGCTTGCGG
TCTGGCCCTGAGGAGCTTCGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

53.955

100

0.54
  pilM Legionella pneumophila strain ERS1305867

46.61

100

0.466