Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OKW98_RS01180 Genome accession   NZ_CP110644
Coordinates   249604..251097 (+) Length   497 a.a.
NCBI ID   WP_265387638.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 244604..256097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS01145 (OKW98_01145) - 245246..245575 (-) 330 WP_265387634.1 hypothetical protein -
  OKW98_RS01150 (OKW98_01150) - 245669..246100 (-) 432 WP_265387635.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OKW98_RS01155 (OKW98_01155) - 246350..247687 (-) 1338 WP_037016614.1 ammonium transporter -
  OKW98_RS01160 (OKW98_01160) glnK 247722..248060 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  OKW98_RS01165 (OKW98_01165) - 248478..248762 (+) 285 WP_265387636.1 accessory factor UbiK family protein -
  OKW98_RS01170 (OKW98_01170) - 248783..248935 (-) 153 Protein_230 helix-turn-helix transcriptional regulator -
  OKW98_RS01175 (OKW98_01175) - 248954..249487 (-) 534 WP_265387637.1 GNAT family N-acetyltransferase -
  OKW98_RS01180 (OKW98_01180) comM 249604..251097 (+) 1494 WP_265387638.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OKW98_RS01185 (OKW98_01185) - 251159..251458 (+) 300 WP_265387639.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  OKW98_RS01190 (OKW98_01190) - 251445..251729 (+) 285 WP_265387640.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OKW98_RS01195 (OKW98_01195) - 251765..253741 (-) 1977 WP_265387641.1 methyl-accepting chemotaxis protein -
  OKW98_RS01200 (OKW98_01200) - 253960..254880 (-) 921 WP_133773820.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53069.10 Da        Isoelectric Point: 7.4925

>NTDB_id=755582 OKW98_RS01180 WP_265387638.1 249604..251097(+) (comM) [Pseudomonas sp. KU26590]
MSLAIVLSRAQVGVEAPAVTVETHLANGLPSLTLVGLPEGAVKESKDRVRSAILNCRLEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASAQVPTLALEGIECLGELALSGAIRPVQGVLPAALAAREAGHTLIVPAVNAEEACLASGLKVIAVSHL
LELVSHLNGHTVISPYKSNGLILQTQPYPDLSEVQGQIAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
LEALEVAAIQSVASHAPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYHGEPTGRCRCSTDQIQRYRNKLSGPLLDRIDLHLTVARETTSLAATPDC
KGESASAAEVVSDARQRQQRRQGCANAFLDLPALRQHCALLPEDEAWLENACERLNLSLRAAHRLLKVARTLADLEKVDA
IARCHIAEALQYRPSSN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=755582 OKW98_RS01180 WP_265387638.1 249604..251097(+) (comM) [Pseudomonas sp. KU26590]
ATGTCCCTCGCGATCGTTCTGAGCCGTGCCCAAGTTGGCGTTGAAGCGCCTGCCGTGACCGTCGAAACCCATCTCGCCAA
TGGGTTGCCCAGCCTGACGCTGGTGGGTCTGCCGGAAGGTGCGGTGAAGGAAAGCAAGGATCGGGTGCGCAGTGCGATCC
TCAACTGTCGGCTGGAATTCCCGGCGCGGCGCATCACCTTGAATCTGGCGCCTGCCGATTTGCCCAAGGACGGCGGACGC
TTCGATCTTGCCATCGCGCTTGGCTTGCTGGCCGCCAGCGCGCAGGTGCCGACCCTTGCGCTGGAGGGCATCGAATGCCT
GGGGGAGCTGGCGTTGTCGGGAGCGATTCGGCCCGTGCAGGGGGTGCTCCCGGCGGCACTGGCTGCGCGTGAGGCGGGCC
ACACGCTGATCGTGCCGGCGGTGAATGCCGAGGAAGCGTGTCTGGCGTCAGGCCTGAAGGTGATCGCGGTCAGTCATCTG
CTGGAGCTGGTGTCGCACCTGAATGGACACACGGTTATCTCGCCCTATAAATCCAATGGCCTGATCCTGCAGACGCAGCC
TTATCCCGACTTGAGTGAGGTGCAAGGCCAGATCGCTGCCAAACGCGCGTTGCTGGTGGCCGCAGCTGGCGCGCATAACC
TGCTTTTCAGCGGTCCTCCCGGCACCGGTAAAACGCTGCTCGCGAGCCGTTTGCCCGGGCTATTGCCGCCGCTGGATGAG
CTCGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTCACGCGCCGCTGACCAGTTGGCCCCAGCGCCCTTTCCG
CCAGCCTCATCACTCGGCATCAGGTCCTGCGCTGGTTGGGGGTGGCAGTCGCCCGCAACCTGGAGAAATCACCCTCGCGC
ACCACGGCGTGCTGTTTCTGGACGAGCTTCCGGAGTTTGATCGACGTGTGCTGGAGGTCCTGCGCGAGCCCCTCGAGTCT
GGCCACATCGTGATTTCCCGGGCGCGGGATCGGGTGCGCTTTCCGGCGCGCTTTCAACTGGTCGCGGCGATGAACCCCTG
CCCGTGCGGTTATCACGGCGAGCCAACCGGGCGCTGCCGTTGCTCAACCGATCAGATTCAGCGTTACCGCAACAAGCTGT
CCGGCCCATTGCTCGACCGGATTGACCTGCACCTGACGGTCGCCCGCGAAACCACGTCTTTAGCGGCCACGCCCGACTGC
AAGGGTGAAAGCGCCAGCGCAGCGGAGGTGGTATCCGATGCACGCCAGCGCCAACAACGACGTCAGGGCTGCGCCAATGC
ATTTCTTGATCTTCCTGCGCTGCGTCAGCACTGCGCGCTGTTGCCGGAAGACGAAGCCTGGCTCGAGAACGCCTGCGAAC
GCCTGAACTTGTCTCTGCGCGCCGCCCACCGCCTGCTGAAAGTCGCGCGCACGCTGGCTGATCTGGAGAAGGTGGACGCA
ATCGCCCGATGCCACATTGCTGAGGCTTTGCAGTATCGGCCTTCGTCGAATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.586

100

0.541
  comM Haemophilus influenzae Rd KW20

53.8

100

0.541
  comM Vibrio campbellii strain DS40M4

53.737

99.598

0.535
  comM Legionella pneumophila str. Paris

49.798

99.799

0.497
  comM Legionella pneumophila strain ERS1305867

49.798

99.799

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.024

100

0.477