Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OOT55_RS14175 Genome accession   NZ_CP110629
Coordinates   3324029..3325534 (-) Length   501 a.a.
NCBI ID   WP_265366500.1    Uniprot ID   -
Organism   Marinimicrobium sp. C6131     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3319029..3330534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT55_RS14160 (OOT55_14160) - 3320308..3321075 (+) 768 WP_265366497.1 SDR family NAD(P)-dependent oxidoreductase -
  OOT55_RS14165 (OOT55_14165) - 3321465..3323039 (+) 1575 WP_265366498.1 sodium/sugar symporter -
  OOT55_RS14170 (OOT55_14170) - 3323043..3323954 (+) 912 WP_265366499.1 SMP-30/gluconolactonase/LRE family protein -
  OOT55_RS14175 (OOT55_14175) comM 3324029..3325534 (-) 1506 WP_265366500.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OOT55_RS14180 (OOT55_14180) - 3325643..3327031 (-) 1389 WP_265366501.1 DUF1552 domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53807.46 Da        Isoelectric Point: 7.5578

>NTDB_id=755460 OOT55_RS14175 WP_265366500.1 3324029..3325534(-) (comM) [Marinimicrobium sp. C6131]
MSLAVVYSRAKLGVQAPLVTVEVHLSNGLPALNMVGLPETAVKESKDRVRSAILNSHLEFPARRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPEDSLSGCEFMGELALSGELRPVTGALPAALAASDAGRHLVIAADNADEAALCDSTAVFSAKNL
LSVCAHLHQRERLPQAEGPADTTEEPTLDFDLSDVKGQVQAKRALEVAASGGHNLLMYGPPGTGKTMLASRLPGILPPLE
NRERLDVAAVYSVAPGAGSHSNRVRPFRSPHHTASAIALVGGGSNPRPGEISLAHSGVLFLDELPEFHRHVLEVLREPLE
SGEVRISRARAQAVYPARFQLVAAMNPCPCGYHGAAEGDCTCTPDQIRRYRDKISGPLLDRIDMHVPVRLLKRGELQSKG
EGERSTVVRERVIAARQRQLDRQGKANHQLSVPELERVCALTPANKNLLEDAIEKLGLSSRAYHRVLKVARTLADMSGSE
SLETVHISEALGYRTLDRRKG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=755460 OOT55_RS14175 WP_265366500.1 3324029..3325534(-) (comM) [Marinimicrobium sp. C6131]
ATGTCGCTCGCCGTAGTCTATTCACGCGCAAAACTCGGGGTCCAGGCCCCACTGGTTACCGTCGAAGTTCATCTCTCCAA
CGGCCTACCCGCACTCAATATGGTAGGCCTGCCCGAAACCGCCGTGAAAGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAACAGCCATCTGGAATTTCCCGCCCGACGGATTACCGTCAATCTCGCACCCGCGGACCTTCCCAAAGAAGGTGGTCGT
TTTGACCTACCGATAGCCCTCGGCATTCTGGCCGCCTCCGGTCAGATTCCCGAAGACAGCCTGAGCGGTTGTGAGTTTAT
GGGCGAGCTGGCCCTGTCCGGCGAGCTGCGTCCGGTCACCGGTGCCCTGCCCGCGGCGCTGGCCGCCAGCGATGCCGGAC
GGCATCTGGTGATCGCCGCCGACAACGCTGACGAAGCCGCGCTATGTGATTCCACCGCCGTGTTCTCTGCGAAAAACCTG
CTCTCGGTATGCGCGCATTTGCATCAGCGGGAGCGCTTGCCCCAGGCCGAGGGGCCAGCCGATACCACCGAAGAACCGAC
CCTGGATTTCGACCTGAGCGATGTCAAAGGCCAGGTACAGGCCAAACGGGCTCTGGAGGTCGCGGCCAGCGGCGGCCATA
ACCTGTTGATGTATGGCCCGCCGGGCACCGGCAAAACCATGCTTGCCAGTCGTCTGCCGGGCATACTGCCACCCCTGGAG
AATCGTGAGCGGCTGGATGTGGCGGCGGTGTATTCGGTGGCCCCCGGGGCCGGCAGTCACAGCAATCGGGTGCGTCCCTT
CCGGTCGCCCCACCACACCGCCTCGGCGATTGCGCTGGTGGGCGGCGGTTCCAATCCGCGCCCGGGGGAGATTTCTCTGG
CCCACAGCGGGGTGTTGTTTCTGGACGAATTGCCGGAGTTTCATCGGCATGTCCTCGAAGTGCTGCGCGAGCCTCTGGAA
AGTGGCGAAGTGCGTATTTCCCGCGCCCGGGCTCAGGCCGTCTACCCGGCCCGTTTTCAATTGGTCGCGGCCATGAACCC
CTGCCCCTGCGGTTACCACGGTGCAGCCGAGGGCGACTGCACCTGCACCCCGGATCAGATTCGCCGCTACCGGGACAAGA
TCTCCGGACCATTACTGGATCGCATTGATATGCATGTACCGGTGCGTTTACTGAAGCGCGGGGAGCTGCAGAGCAAAGGT
GAAGGTGAGCGCAGTACCGTCGTGCGCGAGCGGGTCATCGCCGCCCGCCAGCGTCAATTGGACCGGCAGGGCAAAGCCAA
CCATCAGTTGAGTGTGCCCGAGCTGGAGCGGGTGTGCGCACTGACGCCGGCCAATAAAAACCTCCTGGAGGATGCGATTG
AAAAGCTCGGGTTATCGAGTCGGGCGTATCATCGTGTTTTGAAAGTGGCACGGACACTTGCCGACATGTCGGGGAGTGAG
TCTCTGGAAACGGTGCATATCAGTGAGGCGTTGGGGTATCGGACGTTGGATCGGCGCAAGGGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.285

100

0.573
  comM Vibrio cholerae strain A1552

56

99.8

0.559
  comM Glaesserella parasuis strain SC1401

55.467

100

0.557
  comM Haemophilus influenzae Rd KW20

55.138

100

0.557
  comM Legionella pneumophila str. Paris

53.722

99.202

0.533
  comM Legionella pneumophila strain ERS1305867

53.722

99.202

0.533
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.477