Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OO006_RS01930 Genome accession   NZ_CP110623
Coordinates   391529..392002 (-) Length   157 a.a.
NCBI ID   WP_265371963.1    Uniprot ID   -
Organism   Prosthecochloris sp. SCSIO W1101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 386529..397002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO006_RS01915 (OO006_01915) - 387496..388698 (-) 1203 WP_265371960.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  OO006_RS01920 (OO006_01920) - 388966..389961 (+) 996 WP_265371961.1 NAD-dependent epimerase/dehydratase family protein -
  OO006_RS01925 (OO006_01925) holA 390310..391356 (-) 1047 WP_265371962.1 DNA polymerase III subunit delta -
  OO006_RS01930 (OO006_01930) ssb 391529..392002 (-) 474 WP_265371963.1 single-stranded DNA-binding protein Machinery gene
  OO006_RS01935 (OO006_01935) - 392190..392987 (-) 798 WP_265371964.1 dihydroorotate dehydrogenase electron transfer subunit -
  OO006_RS01940 (OO006_01940) - 393202..394419 (+) 1218 WP_265371965.1 TRC40/GET3/ArsA family transport-energizing ATPase -
  OO006_RS01945 (OO006_01945) - 394537..394947 (+) 411 WP_265371966.1 chlorosome protein C -
  OO006_RS01950 (OO006_01950) - 395081..395326 (+) 246 WP_110022439.1 bacteriochlorophyll c-binding family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17604.45 Da        Isoelectric Point: 5.2798

>NTDB_id=755426 OO006_RS01930 WP_265371963.1 391529..392002(-) (ssb) [Prosthecochloris sp. SCSIO W1101]
MARGLNKAMLIGHLGNDPEMRVTASGQSVVNFTVATNESFRDNNGNMQERTEWHRIVAWGKLAEICNQYLKKGRQVYVEG
RLQTRSWDDNKTGEKKYTTEIICSDMQMLGSGRDQGGQGQDSNPSFQQPIAQKNSFRDDTPDQGGGLSETEKDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=755426 OO006_RS01930 WP_265371963.1 391529..392002(-) (ssb) [Prosthecochloris sp. SCSIO W1101]
ATGGCACGTGGACTCAATAAAGCAATGCTCATAGGGCACCTCGGCAACGACCCTGAAATGCGGGTAACCGCCTCGGGGCA
ATCTGTTGTTAATTTTACCGTCGCAACCAACGAAAGTTTCAGAGACAACAATGGCAACATGCAGGAAAGAACCGAATGGC
ACCGCATTGTTGCCTGGGGAAAACTGGCTGAAATTTGCAACCAGTACCTGAAAAAAGGCCGACAGGTTTACGTTGAAGGC
AGGCTACAGACCAGAAGCTGGGATGACAACAAAACCGGAGAAAAAAAATACACAACGGAAATCATCTGTTCCGACATGCA
AATGCTCGGATCAGGAAGAGACCAGGGCGGACAGGGTCAAGACAGCAACCCGTCGTTCCAGCAGCCCATTGCCCAGAAAA
ACAGCTTCAGAGATGATACCCCTGATCAAGGTGGAGGTTTATCCGAAACGGAAAAGGATGACCTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.182

100

0.484
  ssb Neisseria gonorrhoeae MS11

40.805

100

0.452
  ssb Neisseria meningitidis MC58

40.571

100

0.452
  ssb Glaesserella parasuis strain SC1401

46.212

84.076

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.369