Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OO004_RS08880 Genome accession   NZ_CP110621
Coordinates   1870173..1871702 (-) Length   509 a.a.
NCBI ID   WP_015690950.1    Uniprot ID   -
Organism   Pasteurella multocida strain P504190     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1865173..1876702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO004_RS08860 (OO004_08860) - 1866466..1867149 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  OO004_RS08865 (OO004_08865) envC 1867332..1868561 (+) 1230 WP_170352211.1 murein hydrolase activator EnvC -
  OO004_RS08870 (OO004_08870) - 1868558..1869400 (+) 843 WP_015690948.1 divergent polysaccharide deacetylase family protein -
  OO004_RS08875 (OO004_08875) - 1869421..1870107 (+) 687 WP_015690949.1 hypothetical protein -
  OO004_RS08880 (OO004_08880) comM 1870173..1871702 (-) 1530 WP_015690950.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OO004_RS08885 (OO004_08885) yihA 1871810..1872427 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  OO004_RS08890 (OO004_08890) - 1872538..1873407 (+) 870 WP_015690951.1 VirK/YbjX family protein -
  OO004_RS08895 (OO004_08895) trmL 1873482..1873958 (-) 477 WP_005757697.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  OO004_RS08900 (OO004_08900) - 1874116..1874442 (+) 327 WP_015690952.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OO004_RS08905 (OO004_08905) - 1874529..1874855 (+) 327 WP_015690953.1 HigA family addiction module antitoxin -
  OO004_RS08910 (OO004_08910) - 1874909..1876429 (-) 1521 WP_015690954.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55946.36 Da        Isoelectric Point: 9.6874

>NTDB_id=755412 OO004_RS08880 WP_015690950.1 1870173..1871702(-) (comM) [Pasteurella multocida strain P504190]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTTLPLASDLPTQHDPAPLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLIHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=755412 OO004_RS08880 WP_015690950.1 1870173..1871702(-) (comM) [Pasteurella multocida strain P504190]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCTGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCACGTTACCTTTAGCCTCAGACCTGCCTACACAACATGATCCAGCCCC
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTATTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCAGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATAATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGTGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGCTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.283

100

0.843
  comM Glaesserella parasuis strain SC1401

77.712

99.607

0.774
  comM Vibrio cholerae strain A1552

65.945

99.804

0.658
  comM Vibrio campbellii strain DS40M4

65.748

99.804

0.656
  comM Legionella pneumophila str. Paris

51.6

98.232

0.507
  comM Legionella pneumophila strain ERS1305867

51.6

98.232

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47