Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OM794_RS21615 Genome accession   NZ_CP110535
Coordinates   4650164..4651672 (+) Length   502 a.a.
NCBI ID   WP_226250868.1    Uniprot ID   -
Organism   Halomonas sp. BDJS001     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4645164..4656672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM794_RS21595 (OM794_21595) - 4645903..4648005 (+) 2103 WP_226250864.1 TonB-dependent siderophore receptor -
  OM794_RS21600 (OM794_21600) - 4648177..4649064 (+) 888 WP_226250865.1 ABC transporter substrate-binding protein -
  OM794_RS21605 (OM794_21605) - 4649125..4649622 (-) 498 WP_226250866.1 type II toxin-antitoxin system YhaV family toxin -
  OM794_RS21610 (OM794_21610) - 4649619..4649954 (-) 336 WP_265154053.1 type II toxin-antitoxin system PrlF family antitoxin -
  OM794_RS21615 (OM794_21615) comM 4650164..4651672 (+) 1509 WP_226250868.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OM794_RS21620 (OM794_21620) - 4651695..4652273 (-) 579 WP_226250869.1 NADPH-dependent FMN reductase -
  OM794_RS21625 (OM794_21625) - 4652492..4653802 (+) 1311 WP_226250870.1 esterase-like activity of phytase family protein -
  OM794_RS21630 (OM794_21630) - 4653908..4654891 (-) 984 WP_226250871.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53642.90 Da        Isoelectric Point: 7.5273

>NTDB_id=755271 OM794_RS21615 WP_226250868.1 4650164..4651672(+) (comM) [Halomonas sp. BDJS001]
MTLAIVATRAGVGLDAPAVHVEVHLANGLPGLTLVGLPETAVKESRERVRSALVNAGFDFPNTRRITLNLAPADLPKEGG
RFDLPIALGILAASGQIPVEALEGMECAGELALDGKLRAVPGILPFALATRRAKKALIIPRACADEAALAGDLPVLPADT
LWQVVAHLLDQEKIPPHKLSASVKTTAPVDDLADVRGQQQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLS
EEDALEVAAVRSVCGLPLEADWGKRPFRQPHHSASAAALVGGGSKPKPGEISLAHHGVLFLDELPEFSRHVLEVLRQPLE
TGEIHLARASHERRYPAQFQLVAAMNPCPCGHLGDPRQRCQCTASQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAQT
QGESSEAVRERVMAARERQMARGALNSQLSGKALEAACALNDEERAWLAGVLEKLKLSARAYHRVLRVALTLADLQGEPK
PTQPHLIEAIGYRQLDRMLKGA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=755271 OM794_RS21615 WP_226250868.1 4650164..4651672(+) (comM) [Halomonas sp. BDJS001]
ATGACGCTAGCCATTGTAGCCACGCGGGCAGGCGTAGGTTTAGATGCACCGGCGGTGCATGTTGAGGTGCATCTGGCTAA
CGGCTTGCCGGGCCTAACGCTAGTGGGTTTGCCGGAAACGGCGGTAAAAGAGAGCCGCGAGCGGGTGCGCAGTGCGCTAG
TCAATGCAGGCTTTGATTTTCCCAATACCCGCCGTATTACCTTAAACCTCGCCCCCGCTGATCTTCCCAAAGAAGGTGGC
CGTTTTGATCTGCCCATTGCCCTAGGTATTCTTGCCGCCTCCGGGCAAATTCCCGTCGAAGCGCTGGAAGGCATGGAGTG
CGCTGGCGAGTTAGCCTTGGATGGCAAGCTGCGTGCCGTGCCGGGCATACTGCCCTTTGCCCTTGCCACACGGCGAGCAA
AGAAAGCGCTGATTATTCCCCGCGCCTGCGCCGATGAAGCCGCCCTGGCGGGCGATTTGCCGGTACTACCTGCCGATACG
CTCTGGCAAGTCGTCGCCCACCTACTCGATCAAGAGAAGATCCCGCCGCACAAGCTCAGTGCCTCGGTGAAAACCACTGC
CCCAGTGGATGATCTTGCCGATGTGCGCGGCCAGCAGCAGGCCCGCCGGGCGCTGGAAGTCGCTGCGGCCGGTGGCCATA
ACCTGTTGTTTGCAGGCCCGCCGGGCACCGGCAAAACCATGCTGGCCAGCCGCCTGCCGGGCATTCTGCCGCCGCTTTCT
GAGGAGGATGCCCTGGAAGTCGCCGCCGTGCGCTCGGTTTGCGGGCTACCGCTGGAAGCTGACTGGGGTAAACGGCCCTT
TAGGCAACCCCATCACAGTGCCAGCGCTGCGGCGCTGGTAGGTGGCGGCTCAAAACCCAAACCCGGCGAGATTTCACTCG
CCCACCACGGCGTGCTGTTCTTGGATGAGCTGCCGGAGTTTTCCCGCCATGTGCTAGAGGTACTTCGACAACCGCTGGAA
ACCGGCGAGATCCATTTAGCCCGCGCCAGTCATGAACGTCGCTACCCTGCTCAATTTCAGTTAGTCGCGGCAATGAATCC
CTGCCCCTGCGGCCATTTGGGCGATCCGCGCCAGCGCTGCCAGTGTACCGCCAGTCAAATCCAACGTTATCAAGCGCGGC
TTTCCGGGCCACTGCTAGACCGTATCGATCTGCAAGTGGAAGTCCCTGCCCTGCCGCCAGAACAGCTCACCGCACAAACC
CAAGGCGAGTCTTCAGAAGCCGTGCGTGAGCGGGTGATGGCCGCCCGAGAACGCCAAATGGCCCGCGGCGCGCTGAATAG
CCAGCTAAGCGGCAAAGCCCTGGAGGCCGCCTGTGCGCTTAACGATGAAGAGCGCGCCTGGCTTGCGGGCGTGCTCGAAA
AGCTCAAGCTCTCCGCCCGCGCCTATCACCGCGTACTGCGCGTAGCCCTGACCCTGGCCGACCTTCAGGGCGAACCCAAG
CCCACCCAGCCGCATCTAATTGAGGCCATTGGTTACCGCCAACTGGATCGGATGCTAAAGGGGGCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.49

100

0.564
  comM Glaesserella parasuis strain SC1401

55.227

100

0.558
  comM Vibrio cholerae strain A1552

55.07

100

0.552
  comM Vibrio campbellii strain DS40M4

54.672

100

0.548
  comM Legionella pneumophila str. Paris

52.295

99.801

0.522
  comM Legionella pneumophila strain ERS1305867

52.295

99.801

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.082

99.004

0.466