Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OM418_RS21550 Genome accession   NZ_CP110533
Coordinates   4554007..4555527 (+) Length   506 a.a.
NCBI ID   WP_196353194.1    Uniprot ID   -
Organism   Enterobacter quasiroggenkampii strain WS12-3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4549007..4560527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM418_RS21525 (OM418_21525) ilvE 4550574..4551503 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  OM418_RS21530 (OM418_21530) ilvM 4551522..4551785 (-) 264 WP_196353192.1 acetolactate synthase 2 small subunit -
  OM418_RS21535 (OM418_21535) ilvG 4551782..4553428 (-) 1647 WP_196353193.1 acetolactate synthase 2 catalytic subunit -
  OM418_RS21540 (OM418_21540) ilvX 4553431..4553481 (-) 51 WP_166792073.1 peptide IlvX -
  OM418_RS21545 (OM418_21545) ilvL 4553568..4553666 (-) 99 WP_001311244.1 ilv operon leader peptide -
  OM418_RS21550 (OM418_21550) comM 4554007..4555527 (+) 1521 WP_196353194.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OM418_RS21555 (OM418_21555) - 4555558..4555896 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  OM418_RS21560 (OM418_21560) hdfR 4556015..4556836 (+) 822 WP_032675646.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54975.97 Da        Isoelectric Point: 6.9989

>NTDB_id=755232 OM418_RS21550 WP_196353194.1 4554007..4555527(+) (comM) [Enterobacter quasiroggenkampii strain WS12-3]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRSGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEVIADVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRERVIAAQARQYTRQNRLNARLDNAGIRQFCALNSEDAVWLEETLTHFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=755232 OM418_RS21550 WP_196353194.1 4554007..4555527(+) (comM) [Enterobacter quasiroggenkampii strain WS12-3]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCCCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTGCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAAGCCAGGGATCGCGTCCGTAGCGCAATAA
TAAATAGCGGTTATACCTTCCCTGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGACCTGCCTAAAGAAGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACAAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGCTGAGAGGCGTTCCCGGCGCGATATCGGGAGCGCTGGAGGCCATACGATCAGGCC
GGCAAATCATTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCGGAAAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAACCGGAGGAGTGTGACGAGGTTATAGCCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAGCGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TGTTGATTGGCCCGCCAGGTACGGGGAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTACTTCCACCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCGATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGTGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAATCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGTTATCCGGTC
CGTTCCTCGACCGTTTCGATTTATCTCTCGAAATCCCGCTTCCTCCTCCGGGCCTGCTCAGGCAGACGGGCATCACAGGT
GAAAGCTCTGCGAAGGTACGCGAGCGGGTGATCGCCGCCCAGGCACGACAGTACACTCGTCAGAACAGGCTAAATGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTGCCCTTAACAGTGAGGATGCGGTATGGCTGGAGGAGACGTTGACGCACT
TTGGGCTATCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGCTATCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.648

99.407

0.583
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439