Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OJ965_RS19490 Genome accession   NZ_CP110473
Coordinates   3639779..3640321 (-) Length   180 a.a.
NCBI ID   WP_009092599.1    Uniprot ID   -
Organism   Pantoea anthophila strain CL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3634779..3645321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ965_RS19470 (OJ965_19465) - 3635880..3636275 (+) 396 WP_009092595.1 transposase -
  OJ965_RS19475 (OJ965_19470) - 3637200..3638159 (-) 960 WP_265137516.1 DMT family transporter -
  OJ965_RS19480 (OJ965_19475) - 3638236..3639063 (-) 828 WP_009092597.1 AraC family transcriptional regulator -
  OJ965_RS19485 (OJ965_19480) - 3639186..3639707 (+) 522 WP_154928661.1 isochorismatase family protein -
  OJ965_RS19490 (OJ965_19485) ssb 3639779..3640321 (-) 543 WP_009092599.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OJ965_RS19495 (OJ965_19490) uvrA 3640546..3643374 (+) 2829 WP_046101018.1 excinuclease ABC subunit UvrA -
  OJ965_RS19500 (OJ965_19495) - 3643609..3644673 (+) 1065 WP_265137517.1 NAD(P)-dependent alcohol dehydrogenase -
  OJ965_RS19505 (OJ965_19500) - 3644712..3645047 (-) 336 WP_009092602.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19429.30 Da        Isoelectric Point: 5.2456

>NTDB_id=755050 OJ965_RS19490 WP_009092599.1 3639779..3640321(-) (ssb) [Pantoea anthophila strain CL1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAGAQGGGNNNGWGQPQQPQGNNNQFSGGAQSRPQQPQ
SAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=755050 OJ965_RS19490 WP_009092599.1 3639779..3640321(-) (ssb) [Pantoea anthophila strain CL1]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAGAGCTGGCGTGATAAGCAGACCGGTGAAAACAAAGAGATCACCG
AGTGGCACCGTGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCGGGTGAATATCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGTCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAACGTTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGTAATGCCGGTGCAGGCGCGCAGGGTGGTGGCAACAACAATG
GCTGGGGCCAGCCGCAGCAGCCGCAGGGCAACAACAATCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCCGCAG
AGTGCGCCTGCCAGCAACAACAACGAACCGCCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.811

100

0.728
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.606
  ssb Neisseria gonorrhoeae MS11

47.253

100

0.478
  ssb Neisseria meningitidis MC58

47.253

100

0.478
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.361