Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ONS87_RS01115 Genome accession   NZ_CP110416
Coordinates   224750..225250 (-) Length   166 a.a.
NCBI ID   WP_104357436.1    Uniprot ID   A0A2S5T513
Organism   Caldimonas thermodepolymerans strain DSM 15264     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 219750..230250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONS87_RS01090 (ONS87_01090) - 219771..220265 (+) 495 WP_104357432.1 NUDIX hydrolase -
  ONS87_RS01095 (ONS87_01095) mnmA 220262..221359 (+) 1098 WP_132765789.1 tRNA 2-thiouridine(34) synthase MnmA -
  ONS87_RS01100 (ONS87_01100) - 221462..222748 (+) 1287 WP_104357434.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  ONS87_RS01105 (ONS87_01105) - 222803..223459 (-) 657 WP_243654610.1 CAP domain-containing protein -
  ONS87_RS01110 (ONS87_01110) - 223547..224536 (-) 990 WP_132765788.1 glucokinase -
  ONS87_RS01115 (ONS87_01115) ssb 224750..225250 (-) 501 WP_104357436.1 single-stranded DNA-binding protein Machinery gene
  ONS87_RS01120 (ONS87_01120) - 225443..226822 (+) 1380 WP_104357437.1 chloride channel protein -
  ONS87_RS01125 (ONS87_01125) - 227107..228195 (+) 1089 WP_132765786.1 hydrogenase small subunit -
  ONS87_RS01130 (ONS87_01130) - 228259..230115 (+) 1857 WP_104357439.1 nickel-dependent hydrogenase large subunit -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18015.84 Da        Isoelectric Point: 5.3752

>NTDB_id=754900 ONS87_RS01115 WP_104357436.1 224750..225250(-) (ssb) [Caldimonas thermodepolymerans strain DSM 15264]
MASVNKVILIGNLGRDPEVRYTPSGSAVCNLSLATTRNWKSRDTGERQEETEWHRVVLYDRLAEIAGEYLRKGRSVYIEG
RLKTRKWQGQDGKDNYTTEIIAEQMQLLGGREGGSSGGGDEGGGYSREPYEGGGGGGRSAPAPRAASKPAPKTSTGFDDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=754900 ONS87_RS01115 WP_104357436.1 224750..225250(-) (ssb) [Caldimonas thermodepolymerans strain DSM 15264]
ATGGCCTCTGTCAACAAAGTCATCCTGATCGGCAACCTCGGCCGCGACCCCGAGGTCCGCTACACGCCCAGCGGCTCGGC
GGTGTGCAACCTGTCGCTGGCCACCACGCGCAACTGGAAGAGCCGCGACACCGGGGAACGGCAGGAAGAGACCGAATGGC
ACCGGGTGGTGCTGTATGACCGCCTGGCCGAAATCGCCGGCGAATACCTGCGCAAGGGCCGCTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAGTGGCAAGGCCAGGACGGCAAGGACAACTACACCACCGAGATCATCGCCGAGCAGATGCAGTT
GCTGGGCGGCCGCGAAGGCGGCAGCAGTGGTGGCGGCGACGAAGGCGGCGGCTACAGCCGCGAGCCGTACGAGGGGGGTG
GCGGCGGCGGCCGTTCCGCCCCGGCGCCGCGCGCGGCCAGCAAGCCCGCGCCCAAGACGTCGACCGGGTTCGACGACATG
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S5T513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.667

100

0.56
  ssb Neisseria gonorrhoeae MS11

50.857

100

0.536
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.536
  ssb Neisseria meningitidis MC58

49.714

100

0.524
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.483

100

0.361