Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LFL96_RS02190 Genome accession   NZ_CP110395
Coordinates   497694..498233 (+) Length   179 a.a.
NCBI ID   WP_280997541.1    Uniprot ID   -
Organism   Paraburkholderia sp. D15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 492694..503233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL96_RS02180 (LFL96_02180) uvrA 493226..496099 (-) 2874 WP_280997537.1 excinuclease ABC subunit UvrA -
  LFL96_RS02185 (LFL96_02185) - 496385..497572 (+) 1188 WP_280997539.1 MFS transporter -
  LFL96_RS02190 (LFL96_02190) ssb 497694..498233 (+) 540 WP_280997541.1 single-stranded DNA-binding protein Machinery gene
  LFL96_RS02195 (LFL96_02195) ltrA 498796..500133 (+) 1338 WP_280997543.1 group II intron reverse transcriptase/maturase -
  LFL96_RS02200 (LFL96_02200) - 501010..502896 (-) 1887 WP_280997545.1 AAA family ATPase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18522.32 Da        Isoelectric Point: 5.3552

>NTDB_id=754865 LFL96_RS02190 WP_280997541.1 497694..498233(+) (ssb) [Paraburkholderia sp. D15]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEMKEATEWHRVSFFGRLAEIVSEYLKKGSSVYLEG
RIRTRKWQAQDGTDRYSTEIVAEQMQMLGGRGGSMGGGGDEGGYSRGEPSERSGGGGGGRAMSSGGGSRGGSGGGGGGSS
RPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=754865 LFL96_RS02190 WP_280997541.1 497694..498233(+) (ssb) [Paraburkholderia sp. D15]
ATGGCATCCGTGAACAAGGTCATTCTCGTCGGCAACCTCGGAGCCGATCCGGAAGTCCGTTATCTTCCGAGCGGCGACGC
AGTGGCGAACATCCGCCTGGCCACGACGGATCGTTACAAGGACAAGGCGTCCGGCGAGATGAAGGAAGCCACCGAATGGC
ACCGCGTGTCGTTCTTCGGCCGCCTCGCGGAAATCGTGTCCGAGTATCTGAAGAAAGGCTCGTCGGTTTATCTCGAAGGG
CGTATCCGTACGCGCAAGTGGCAGGCGCAGGACGGCACCGATCGTTATTCGACGGAAATCGTCGCGGAACAGATGCAGAT
GCTGGGCGGCCGCGGTGGTTCGATGGGCGGTGGCGGCGATGAGGGCGGATATAGCCGCGGTGAGCCGTCGGAGCGCAGTG
GCGGCGGTGGTGGTGGTCGCGCCATGTCGTCGGGTGGTGGTTCGCGCGGTGGTAGTGGTGGTGGCGGTGGTGGTTCGAGC
CGTCCGAGCGCGCCGGCTGGCGGCGGGTTTGATGAGATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.206

100

0.52
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.458
  ssb Neisseria meningitidis MC58

42.373

98.883

0.419
  ssb Neisseria gonorrhoeae MS11

41.808

98.883

0.413
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.288

98.883

0.369