Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LFL96_RS01750 Genome accession   NZ_CP110395
Coordinates   407811..409346 (-) Length   511 a.a.
NCBI ID   WP_280997335.1    Uniprot ID   -
Organism   Paraburkholderia sp. D15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 402811..414346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL96_RS01735 (LFL96_01735) - 404593..405942 (+) 1350 WP_280997327.1 sigma-54 dependent transcriptional regulator -
  LFL96_RS01740 (LFL96_01740) - 406058..406588 (-) 531 WP_280997331.1 TlpA disulfide reductase family protein -
  LFL96_RS01745 (LFL96_01745) - 406959..407477 (+) 519 WP_281000865.1 hypothetical protein -
  LFL96_RS01750 (LFL96_01750) comM 407811..409346 (-) 1536 WP_280997335.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LFL96_RS01755 (LFL96_01755) - 409466..409729 (-) 264 WP_280997337.1 accessory factor UbiK family protein -
  LFL96_RS01760 (LFL96_01760) - 410174..410512 (+) 339 WP_006048089.1 P-II family nitrogen regulator -
  LFL96_RS01765 (LFL96_01765) - 410557..412065 (+) 1509 WP_280997386.1 ammonium transporter -
  LFL96_RS01770 (LFL96_01770) gshA 412301..413590 (+) 1290 WP_280997388.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53997.87 Da        Isoelectric Point: 7.8710

>NTDB_id=754862 LFL96_RS01750 WP_280997335.1 407811..409346(-) (comM) [Paraburkholderia sp. D15]
MSLAVVRSRAPASGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCDFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPVESLLHREFAGELSLTGALRPMRGAFAMACGTARGSNGASPTPQLYLPAASAAEAALVPGVDV
YGAADLPSLCAHLAGEPDARLAPVAAPTLAEHAPAAILDMGDVIGQRAARRALEVAAAGGHHVLLVGPPGAGKSMLAARL
PGLLPPMTDDEALSSAALLSASRTGFTPSQWRQRPFRAPHHSSSAAALVGGRNPPQPGEITLAHLGVLFLDEFPEFDRHV
LETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCTPEIAARYLRKLSGPLLDRIDIQIEIPAL
TPAELSARSSTPGENSAAIAHRVADARARQLQRQGKTNRELTGREVDDVCRPDAAGEILLREAGERFRWSARAYYRVLKV
ARSIADLAGAVMPSAAQIGEAIQYRRVFAAL

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=754862 LFL96_RS01750 WP_280997335.1 407811..409346(-) (comM) [Paraburkholderia sp. D15]
ATGTCGCTTGCCGTGGTGCGCAGTCGCGCGCCGGCCTCTGGCCGCGCGCCCGAAGTAACCGTCGAGGTTCACCTCGCGAA
CGGATTACCCTCTTTTTCGATCGTCGGCCTGCCGGATCTGGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCGGCGCTGC
AAAACTGCGACTTCGATTTTCCCGTGCGGCGGATCACCGTCAATCTGGCGCCCGCCGACCTGCCGAAGGAATCGGGGCGT
TTCGATCTGCCCATCGCGCTGGGCATTCTCGCGGCAAGCGGCCAGATTCCCGTTGAGTCGCTGCTGCATCGCGAGTTTGC
CGGCGAGCTGTCGCTGACCGGTGCATTGCGGCCAATGCGCGGCGCGTTCGCGATGGCATGCGGAACGGCACGCGGATCGA
ACGGCGCGTCGCCGACGCCTCAACTTTATCTGCCAGCCGCCAGCGCGGCGGAAGCGGCGCTCGTCCCCGGCGTGGATGTG
TACGGCGCCGCCGATCTGCCGTCGCTCTGCGCTCATCTGGCGGGCGAACCGGATGCGAGGCTCGCGCCGGTCGCCGCGCC
CACGCTCGCCGAACACGCGCCCGCCGCGATCCTCGACATGGGCGACGTGATCGGCCAGCGCGCCGCGCGGCGGGCGCTGG
AAGTCGCCGCGGCCGGCGGCCATCACGTGTTGCTGGTCGGCCCGCCCGGCGCGGGCAAGTCCATGCTCGCCGCGCGCCTG
CCAGGCCTGCTGCCGCCCATGACCGACGACGAAGCGCTCAGCTCCGCCGCCCTGCTATCGGCCAGCCGGACGGGGTTCAC
GCCGTCGCAATGGCGGCAGCGGCCGTTTCGCGCGCCGCATCATTCGTCCAGCGCGGCGGCGCTGGTCGGCGGGCGCAATC
CGCCGCAACCGGGCGAGATCACGCTCGCGCACCTCGGCGTGCTATTTCTCGACGAATTCCCCGAGTTCGACCGTCATGTG
CTGGAAACGCTGCGCGAACCGCTGGAAGCCGGCCGCATCACGATCTCGCGCGCCGCGTTGCAGGCGGATTTTCCTGCCGC
ATGCCAATTGATCGCCGCGATGAATCCTTGTCCGTGCGGCTGGCGCGGCGACCCCGGCGGGCGCTGCCGCTGCACGCCGG
AGATCGCGGCGCGCTATCTGCGCAAGCTGTCGGGGCCGCTCCTTGACCGCATCGACATTCAAATAGAGATTCCGGCGCTG
ACGCCGGCGGAGTTGTCGGCCCGCTCGTCGACGCCGGGCGAAAACAGCGCGGCGATCGCTCATCGGGTGGCCGACGCGCG
AGCGCGGCAGCTGCAGCGACAGGGCAAAACCAATCGCGAGCTCACGGGGCGCGAAGTGGATGATGTCTGCCGCCCGGACG
CCGCCGGCGAAATCCTGCTGCGCGAGGCCGGCGAGCGCTTCCGCTGGTCGGCGCGCGCTTACTACCGCGTGCTGAAGGTC
GCCCGCAGTATCGCGGACCTCGCCGGCGCGGTCATGCCGAGTGCCGCGCAGATCGGCGAGGCGATCCAGTACCGGCGCGT
TTTCGCTGCCCTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-129)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.407

99.022

0.489
  comM Vibrio campbellii strain DS40M4

48.419

99.022

0.479
  comM Legionella pneumophila str. Paris

47.244

99.413

0.47
  comM Legionella pneumophila strain ERS1305867

47.244

99.413

0.47
  comM Haemophilus influenzae Rd KW20

47.036

99.022

0.466
  comM Glaesserella parasuis strain SC1401

47.129

98.826

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.888

97.652

0.429