Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OLL83_RS20120 Genome accession   NZ_CP110338
Coordinates   4508386..4509906 (+) Length   506 a.a.
NCBI ID   WP_264920448.1    Uniprot ID   -
Organism   Shewanella algae strain B2215466     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4503386..4514906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL83_RS20095 (OLL83_004019) - 4504247..4505215 (-) 969 WP_264920444.1 ABC transporter substrate-binding protein -
  OLL83_RS20100 (OLL83_004020) - 4505405..4505653 (-) 249 WP_025010076.1 hypothetical protein -
  OLL83_RS20105 (OLL83_004021) - 4505809..4506624 (-) 816 WP_144226303.1 EAL domain-containing protein -
  OLL83_RS20110 (OLL83_004022) - 4506943..4507740 (+) 798 WP_025010078.1 winged helix-turn-helix domain-containing protein -
  OLL83_RS20115 (OLL83_004023) - 4507728..4508228 (+) 501 WP_054744206.1 hypothetical protein -
  OLL83_RS20120 (OLL83_004024) comM 4508386..4509906 (+) 1521 WP_264920448.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OLL83_RS20125 (OLL83_004025) - 4510006..4510902 (+) 897 WP_025010081.1 LysR substrate-binding domain-containing protein -
  OLL83_RS20130 (OLL83_004026) phnX 4511005..4511814 (-) 810 WP_096142470.1 phosphonoacetaldehyde hydrolase -
  OLL83_RS20135 (OLL83_004027) - 4511802..4512929 (-) 1128 WP_264920451.1 phosphonoacetaldehyde reductase -
  OLL83_RS20140 (OLL83_004028) phnE 4512948..4513751 (-) 804 WP_144131482.1 phosphonate ABC transporter, permease protein PhnE -
  OLL83_RS20145 (OLL83_004029) phnC 4513745..4514572 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54469.95 Da        Isoelectric Point: 8.7098

>NTDB_id=754105 OLL83_RS20120 WP_264920448.1 4508386..4509906(+) (comM) [Shewanella algae strain B2215466]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAVRQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=754105 OLL83_RS20120 WP_264920448.1 4508386..4509906(+) (comM) [Shewanella algae strain B2215466]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTAGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAGGGTGGACGT
TACGACCTTCCTATCGCCATTGGCATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATTATCGCCGTCCGTCAAAGGGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCCGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAGCAAACCCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCGCACTCGAGTGACTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGCATGGCCACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCCGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCCTGTGGTGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTAACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACTTCAGAGGCG
GCGCAAGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.621

100

0.557
  comM Haemophilus influenzae Rd KW20

54.688

100

0.553
  comM Vibrio campbellii strain DS40M4

55.03

100

0.551
  comM Glaesserella parasuis strain SC1401

54.635

100

0.547
  comM Legionella pneumophila str. Paris

47.695

98.617

0.47
  comM Legionella pneumophila strain ERS1305867

47.695

98.617

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

100

0.431