Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   UKS_RS09510 Genome accession   NZ_AP021887
Coordinates   1909132..1909794 (-) Length   220 a.a.
NCBI ID   WP_156012962.1    Uniprot ID   -
Organism   Streptococcus sp. 116-D4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1904132..1914794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS09485 (UKS_18400) - 1904281..1904547 (-) 267 WP_001278169.1 Veg family protein -
  UKS_RS09490 (UKS_18410) dnaB 1904549..1905901 (-) 1353 WP_156012954.1 replicative DNA helicase -
  UKS_RS09495 (UKS_18420) rplI 1905945..1906397 (-) 453 WP_156012956.1 50S ribosomal protein L9 -
  UKS_RS09500 (UKS_18430) - 1906394..1908367 (-) 1974 WP_156012958.1 DHH family phosphoesterase -
  UKS_RS09505 (UKS_18440) raiA 1908504..1909052 (-) 549 WP_156012960.1 ribosome-associated translation inhibitor RaiA -
  UKS_RS09510 (UKS_18450) comFC/cflB 1909132..1909794 (-) 663 WP_156012962.1 ComF family protein Machinery gene
  UKS_RS09515 (UKS_18460) comFA/cflA 1909791..1911089 (-) 1299 WP_156012964.1 DEAD/DEAH box helicase Machinery gene
  UKS_RS09520 (UKS_18470) - 1911146..1911781 (+) 636 WP_156012966.1 YigZ family protein -
  UKS_RS09525 (UKS_18480) - 1911797..1912240 (+) 444 WP_156012968.1 PH domain-containing protein -
  UKS_RS09530 (UKS_18490) cysK 1912337..1913263 (+) 927 WP_117304672.1 cysteine synthase A -
  UKS_RS09535 (UKS_18500) - 1913484..1914740 (+) 1257 WP_156012970.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25543.64 Da        Isoelectric Point: 8.3863

>NTDB_id=75390 UKS_RS09510 WP_156012962.1 1909132..1909794(-) (comFC/cflB) [Streptococcus sp. 116-D4]
MKCLLCGQTMKAVLTFRSLLLLRNDDSYLCSDCASTFERIGEEYCPNCMKKGLSTKCKDCQFWCKEGVEVSHRAIFTYNQ
VMKDFFSRYKFDGDFLLRKVFASFLNEELKKYKEYQFVVIPLSPERLLERGFNQVEGFVEAAGFSFQDLLEKREERASSS
KNRSERLATELPFFIKSRVIIPKKILLIDDIYTTGSTINRVKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=75390 UKS_RS09510 WP_156012962.1 1909132..1909794(-) (comFC/cflB) [Streptococcus sp. 116-D4]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGGCTGTTTTAACTTTCAGGAGTCTATTACTTCTGAGGAATGATGACTC
CTATCTTTGTTCAGACTGTGCTTCCACATTTGAGAGAATTGGAGAGGAGTACTGTCCAAATTGTATGAAAAAAGGCTTGT
CAACAAAGTGTAAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGAGGTCAGTCATAGAGCAATTTTTACTTACAATCAA
GTTATGAAGGATTTTTTCAGTAGGTATAAGTTTGATGGAGACTTCCTTTTAAGAAAAGTGTTCGCTTCATTTTTAAATGA
AGAGTTGAAAAAGTACAAAGAGTATCAATTTGTCGTAATTCCCCTAAGTCCTGAAAGATTACTTGAGAGGGGATTTAACC
AGGTTGAAGGTTTTGTTGAAGCAGCTGGGTTCTCTTTTCAAGACTTACTAGAGAAGAGAGAAGAGCGGGCCAGTTCTTCT
AAAAATCGTTCAGAACGTTTGGCAACAGAACTTCCTTTCTTTATTAAAAGTAGAGTCATTATTCCTAAAAAAATTTTACT
TATAGATGATATTTATACTACTGGATCTACTATAAATCGTGTGAAGAAACTGTTGGAAGAAGCTGGTGCTGAAGATGTAA
AAACATTTTCTCTAGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909
  comFC/cflB Streptococcus pneumoniae TIGR4

89.091

100

0.891
  comFC/cflB Streptococcus pneumoniae Rx1

88.636

100

0.886
  comFC/cflB Streptococcus pneumoniae D39

88.636

100

0.886
  comFC/cflB Streptococcus pneumoniae R6

88.636

100

0.886
  comFC/cflB Streptococcus mitis NCTC 12261

88.182

100

0.882

Multiple sequence alignment