Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   QEP20_RS14260 Genome accession   NZ_CP123977
Coordinates   2727905..2728600 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2722905..2733600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS14235 (QEP20_14235) minD 2723841..2724647 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  QEP20_RS14240 (QEP20_14240) minC 2724649..2725329 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  QEP20_RS14245 (QEP20_14245) mreD 2725382..2725900 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  QEP20_RS14250 (QEP20_14250) mreC 2725897..2726769 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  QEP20_RS14255 (QEP20_14255) mreB 2726800..2727813 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QEP20_RS14260 (QEP20_14260) ysxA/radC 2727905..2728600 (-) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  QEP20_RS14265 (QEP20_14265) maf 2728637..2729206 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  QEP20_RS14270 (QEP20_14270) spoIIB 2729359..2730357 (-) 999 WP_003229644.1 stage II sporulation protein SpoIIB -
  QEP20_RS14275 (QEP20_14275) comC 2730484..2731236 (-) 753 WP_080010571.1 A24 family peptidase Machinery gene
  QEP20_RS14280 (QEP20_14280) folC 2731376..2732668 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=753577 QEP20_RS14260 WP_015251546.1 2727905..2728600(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain WH60A]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=753577 QEP20_RS14260 WP_015251546.1 2727905..2728600(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain WH60A]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424