Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   OMK57_RS12655 Genome accession   NZ_CP110264
Coordinates   2547868..2548203 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus halotolerans strain HMB20199     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2542868..2553203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS12635 (OMK57_12635) gcvT 2543458..2544546 (-) 1089 WP_069487188.1 glycine cleavage system aminomethyltransferase GcvT -
  OMK57_RS12640 (OMK57_12640) - 2544990..2546663 (+) 1674 WP_059293610.1 DEAD/DEAH box helicase -
  OMK57_RS12645 (OMK57_12645) - 2546683..2547477 (+) 795 WP_044154602.1 YqhG family protein -
  OMK57_RS12650 (OMK57_12650) sinI 2547661..2547834 (+) 174 WP_024122036.1 anti-repressor SinI Regulator
  OMK57_RS12655 (OMK57_12655) sinR 2547868..2548203 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  OMK57_RS12660 (OMK57_12660) tasA 2548289..2549074 (-) 786 WP_059293609.1 biofilm matrix protein TasA -
  OMK57_RS12665 (OMK57_12665) sipW 2549139..2549723 (-) 585 WP_059293608.1 signal peptidase I SipW -
  OMK57_RS12670 (OMK57_12670) tapA 2549695..2550456 (-) 762 WP_069487187.1 amyloid fiber anchoring/assembly protein TapA -
  OMK57_RS12675 (OMK57_12675) - 2550733..2551056 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  OMK57_RS12680 (OMK57_12680) - 2551099..2551278 (-) 180 WP_003236949.1 YqzE family protein -
  OMK57_RS12685 (OMK57_12685) comGG 2551350..2551724 (-) 375 WP_059335411.1 competence type IV pilus minor pilin ComGG Machinery gene
  OMK57_RS12690 (OMK57_12690) comGF 2551725..2552108 (-) 384 WP_175422400.1 competence type IV pilus minor pilin ComGF Machinery gene
  OMK57_RS12695 (OMK57_12695) comGE 2552134..2552481 (-) 348 WP_069487185.1 competence type IV pilus minor pilin ComGE Machinery gene
  OMK57_RS12700 (OMK57_12700) comGD 2552465..2552896 (-) 432 WP_044154579.1 competence type IV pilus minor pilin ComGD Machinery gene
  OMK57_RS12705 (OMK57_12705) comGC 2552886..2553182 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=753567 OMK57_RS12655 WP_003226345.1 2547868..2548203(+) (sinR) [Bacillus halotolerans strain HMB20199]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=753567 OMK57_RS12655 WP_003226345.1 2547868..2548203(+) (sinR) [Bacillus halotolerans strain HMB20199]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAGTC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1