Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QEP20_RS12990 Genome accession   NZ_CP123977
Coordinates   2514751..2515878 (+) Length   375 a.a.
NCBI ID   WP_015714307.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2509751..2520878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS12960 (QEP20_12960) - 2510329..2510507 (-) 179 Protein_2503 hypothetical protein -
  QEP20_RS12965 (QEP20_12965) arsC 2510862..2511281 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  QEP20_RS12970 (QEP20_12970) acr3 2511293..2512333 (-) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  QEP20_RS12975 (QEP20_12975) yqcK 2512356..2512796 (-) 441 WP_032722151.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  QEP20_RS12980 (QEP20_12980) arsR 2512855..2513172 (-) 318 WP_029318103.1 arsenical resistance operon transcriptional regulator ArsR -
  QEP20_RS12985 (QEP20_12985) yqcI 2513544..2514308 (-) 765 WP_017696291.1 YqcI/YcgG family protein -
  QEP20_RS12990 (QEP20_12990) rapC 2514751..2515878 (+) 1128 WP_015714307.1 response regulator aspartate phosphatase RapE Regulator
  QEP20_RS12995 (QEP20_12995) phrE 2515868..2516002 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  QEP20_RS13000 (QEP20_13000) - 2516112..2516271 (+) 160 Protein_2511 hypothetical protein -
  QEP20_RS13005 (QEP20_13005) yqcG 2516641..2518236 (+) 1596 WP_015714309.1 LXG family T7SS effector endonuclease toxin YqcG -
  QEP20_RS13010 (QEP20_13010) yqcF 2518251..2518829 (+) 579 WP_015714310.1 type VII secretion system immunity protein YqcF -
  QEP20_RS13015 (QEP20_13015) - 2518947..2519093 (+) 147 WP_009967791.1 hypothetical protein -
  QEP20_RS13020 (QEP20_13020) - 2519090..2519452 (-) 363 WP_003229947.1 hypothetical protein -
  QEP20_RS13025 (QEP20_13025) - 2519468..2519947 (-) 480 WP_004399085.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44640.47 Da        Isoelectric Point: 7.5547

>NTDB_id=753569 QEP20_RS12990 WP_015714307.1 2514751..2515878(+) (rapC) [Bacillus subtilis subsp. subtilis strain WH60A]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTMPSDENRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=753569 QEP20_RS12990 WP_015714307.1 2514751..2515878(+) (rapC) [Bacillus subtilis subsp. subtilis strain WH60A]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTTACTGA
TGCTGAAATGTTAAAAGCTGAAATCGAACGTGATATAGAGGTTATGGAAGAAGATCAAGATTTGCTTATTTATTATCAAT
TAATGGCCTTCCGCCATAAAATCATGTTGGAATACACGATGCCATCCGATGAAAACCGAATGGAACTTTCAGAATATTTA
AAGAAAATCGAAGGGCATAAGAAGAAGCTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATATAACATCTATAAAAAACACGAGCTTTATTCTGTTCGGCGTATACAGTGCCATTTTGTCATTGCCGGTAACTA
TGATGACCTTGAAAATCATGAGAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCTGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGTTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCATTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATTAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)

Tetratricopeptide repeat (TPR_12)

(184-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384