Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OMP39_RS01070 Genome accession   NZ_CP110257
Coordinates   239544..241067 (-) Length   507 a.a.
NCBI ID   WP_264892977.1    Uniprot ID   -
Organism   Schlegelella aquatica strain LMG 23380     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 234544..246067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP39_RS01050 (OMP39_01050) - 235141..238341 (+) 3201 WP_264892975.1 type I restriction endonuclease subunit R -
  OMP39_RS01055 (OMP39_01055) - 238338..239066 (+) 729 WP_264892976.1 SprT family zinc-dependent metalloprotease -
  OMP39_RS01060 (OMP39_01060) - 239067..239189 (-) 123 Protein_209 lysozyme -
  OMP39_RS01065 (OMP39_01065) - 239181..239492 (-) 312 Protein_210 styrene monooxygenase/indole monooxygenase family protein -
  OMP39_RS01070 (OMP39_01070) comM 239544..241067 (-) 1524 WP_264892977.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OMP39_RS01075 (OMP39_01075) - 241325..242095 (+) 771 WP_264892978.1 TorF family putative porin -
  OMP39_RS01080 (OMP39_01080) glnK 242124..242462 (+) 339 WP_264892979.1 P-II family nitrogen regulator -
  OMP39_RS01085 (OMP39_01085) amt 242519..244048 (+) 1530 WP_264892980.1 ammonium transporter -
  OMP39_RS01090 (OMP39_01090) gshA 244320..245615 (+) 1296 WP_264892981.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54036.02 Da        Isoelectric Point: 7.8614

>NTDB_id=753409 OMP39_RS01070 WP_264892977.1 239544..241067(-) (comM) [Schlegelella aquatica strain LMG 23380]
MSLAVIHSRALAALQAPPVTVEVHLANGLPAFTLVGLADTEVKESRERVRAALLNSGLEFPHNKRITVNLAPADLPKESG
RFDLPIALGILAASGQLDAERLAPFEFAGELSLAGDLRPVRGALAMSVALRRQGCERAMVLPLDSAREASLVPDAQVYGA
RHLLDVVASLHPERAASAEAGWVRVQHELAVAEPVHPDLRDVKGQNAAKRAMEVAAAGGHSLLFVGPPGTGKSMLAHRFA
GLLPALEVDEALESAAVLSLAGHFEPRRWRQRVLRCPHHSASSVALVGGGVPPRPGEISLAHHGVLFLDELPEFPRPALE
ALREPLETGQITISRASQRAEFPARFQLVAAMNPCPCGHLGSRLQACRCTPDAVARYQAKLSGPLLDRIDLQVEVTAVPP
EELLHAPPGEPSAAVAERVARARERQLARQGQLNAHLAGAQLDVHLRPDEAAGRFLESAAKKLGWSSRSLHRVLKVARTV
ADLAGSEAISTSHVAEAVQLRRAIASN

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=753409 OMP39_RS01070 WP_264892977.1 239544..241067(-) (comM) [Schlegelella aquatica strain LMG 23380]
ATGTCTCTTGCCGTCATCCACAGCCGCGCGCTGGCCGCGCTGCAGGCACCGCCCGTCACCGTCGAGGTGCACCTCGCCAA
CGGCCTGCCGGCCTTCACGCTGGTGGGCCTGGCGGACACCGAGGTCAAGGAATCGCGCGAGCGCGTGCGCGCGGCCCTGC
TGAACAGCGGGCTGGAGTTCCCCCACAACAAGCGCATCACGGTCAACCTGGCGCCGGCCGATCTGCCGAAGGAATCGGGC
CGATTCGACCTGCCGATCGCGCTGGGCATCCTGGCGGCCAGCGGGCAGCTCGACGCCGAGCGGCTGGCGCCGTTCGAGTT
CGCGGGGGAACTGTCGCTGGCCGGAGACCTGCGCCCGGTGCGCGGGGCCTTGGCGATGAGCGTCGCGCTGCGGCGCCAGG
GCTGTGAACGCGCGATGGTGCTGCCGCTGGACAGCGCCCGCGAGGCCTCGCTCGTGCCGGACGCCCAGGTCTACGGCGCG
CGGCACCTGCTCGACGTGGTCGCTTCGCTGCATCCCGAGCGTGCTGCCTCCGCAGAAGCGGGCTGGGTGCGCGTGCAGCA
CGAACTGGCCGTGGCCGAGCCCGTGCACCCCGACCTGCGCGACGTGAAGGGCCAAAATGCCGCCAAGCGGGCGATGGAGG
TCGCCGCGGCCGGGGGGCACTCGCTGCTGTTCGTCGGCCCGCCCGGCACGGGCAAGTCGATGCTGGCGCATCGCTTCGCT
GGTCTGCTGCCGGCGCTGGAGGTGGACGAGGCCCTGGAATCGGCCGCGGTGCTGAGCCTGGCCGGCCACTTCGAGCCCCG
GCGCTGGCGCCAGCGCGTGCTGCGCTGCCCGCACCACAGTGCCTCGTCGGTGGCGCTGGTGGGTGGCGGCGTGCCGCCGC
GCCCCGGCGAGATCTCCCTCGCCCACCACGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCCCGCGGCCTGCCCTGGAG
GCCTTGCGTGAGCCGCTGGAGACGGGGCAGATCACCATCTCGAGGGCGTCGCAGCGCGCGGAGTTCCCGGCCCGCTTCCA
GCTCGTCGCAGCGATGAATCCCTGCCCTTGCGGGCATCTCGGCTCGCGGTTGCAGGCGTGCCGATGCACGCCGGATGCGG
TCGCACGCTATCAGGCCAAGCTGAGCGGACCGCTGCTGGATCGCATCGACCTGCAGGTGGAAGTGACGGCCGTGCCGCCC
GAGGAGCTGCTCCACGCGCCGCCGGGCGAGCCGAGCGCCGCCGTGGCCGAGCGGGTGGCCCGGGCGCGAGAACGCCAGCT
CGCCCGCCAGGGGCAGCTCAACGCGCACCTCGCGGGGGCGCAGCTCGATGTGCACCTGCGGCCGGACGAGGCGGCGGGCC
GCTTCCTGGAGTCCGCCGCGAAGAAGCTGGGGTGGTCTTCACGCAGCCTGCACCGGGTGCTCAAGGTCGCCCGCACGGTG
GCCGATCTGGCGGGCAGCGAGGCCATCAGCACGTCGCATGTGGCCGAGGCCGTGCAATTGCGGCGCGCGATCGCCTCGAA
CTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.381

99.408

0.521
  comM Haemophilus influenzae Rd KW20

51.889

99.211

0.515
  comM Vibrio campbellii strain DS40M4

50.294

100

0.507
  comM Glaesserella parasuis strain SC1401

50.297

99.606

0.501
  comM Legionella pneumophila str. Paris

48.431

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.431

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

99.803

0.436