Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OLD77_RS00780 Genome accession   NZ_CP110227
Coordinates   159755..161275 (-) Length   506 a.a.
NCBI ID   WP_269874300.1    Uniprot ID   -
Organism   Serratia rubidaea strain AO4-P6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 154755..166275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLD77_RS00770 (OLD77_00770) hdfR 158442..159269 (-) 828 WP_269876048.1 HTH-type transcriptional regulator HdfR -
  OLD77_RS00775 (OLD77_00775) - 159390..159728 (+) 339 WP_054307720.1 DUF413 domain-containing protein -
  OLD77_RS00780 (OLD77_00780) comM 159755..161275 (-) 1521 WP_269874300.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OLD77_RS00785 (OLD77_00785) - 161608..162840 (+) 1233 WP_269874302.1 MFS transporter -
  OLD77_RS00790 (OLD77_00790) ilvL 162974..163072 (+) 99 WP_015962288.1 ilv operon leader peptide -
  OLD77_RS00795 (OLD77_00795) ilvG 163215..164861 (+) 1647 WP_191978159.1 acetolactate synthase 2 catalytic subunit -
  OLD77_RS00800 (OLD77_00800) ilvM 164858..165124 (+) 267 WP_015962286.1 acetolactate synthase 2 small subunit -
  OLD77_RS00805 (OLD77_00805) - 165145..166071 (+) 927 WP_015962285.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54666.10 Da        Isoelectric Point: 8.8278

>NTDB_id=753217 OLD77_RS00780 WP_269874300.1 159755..161275(-) (comM) [Serratia rubidaea strain AO4-P6]
MSLAVIFTRATLGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALLNNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIPADRLAEHEFLGELALSGALRAVSGAIPAAMAAQQDGRRLILPAENEGEVGLLPKEGTRVATHL
LAVCAFLLGQGELPLAQPPAEPPNANRGDLQDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLTDQ
EALESVAVASLQHQPAGRLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRTLDALREPLES
GEIVISRASAKVCFPARIQLIAAMNPSPTGHYQGMHNRTPPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGTLSKQQEPG
ESSQQVRQRVIAARERQLQRAGKINAILGKREVDRDCPLCDADAHYLETTLLKLGLSVRAWHRILKVARTLADLAGEKHI
ARHHLSEALGYRRMERLLIQLHRSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=753217 OLD77_RS00780 WP_269874300.1 159755..161275(-) (comM) [Serratia rubidaea strain AO4-P6]
ATGTCATTGGCGGTTATTTTCACTCGGGCTACGCTGGGCGTTCAGGCGCCGTCGGTGACGGTCGAAGTTCATATCAGCAA
CGGGTTGCCCGGATTAACGCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGGCGCGCGATCGGGTACGCAGCGCACTGC
TCAACAACGGTTTTACCTTTCCCGCGAAACGCATCACCGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAGGGCGGCCGG
TACGATCTGCCGATCGCTCTGGCGATCCTCGCCGCTTCGGAGCAGATCCCAGCAGATCGGCTGGCCGAACACGAATTTCT
CGGCGAACTGGCGCTGTCCGGTGCATTGCGCGCCGTCAGCGGCGCCATCCCCGCAGCAATGGCGGCACAGCAGGATGGCA
GAAGGCTGATCCTGCCTGCAGAAAATGAAGGGGAGGTCGGCCTGCTGCCGAAAGAGGGAACGCGGGTTGCAACGCACCTG
TTGGCCGTCTGCGCCTTTCTGCTTGGTCAGGGTGAACTGCCACTTGCCCAGCCTCCCGCCGAGCCGCCTAACGCCAACCG
GGGGGACCTGCAGGATATTATCGGCCAGGAACAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCGGTCACAATCTGT
TGCTGCTCGGCCCGCCAGGCACCGGCAAAACCATGCTGGCAAGCCGCCTGCCGGGATTATTGCCGCCGCTAACCGACCAG
GAGGCGCTGGAGAGCGTCGCGGTCGCCAGCCTGCAGCATCAGCCCGCCGGCAGGCTGCCGTGGCGCCAGCGGCCATTCAG
GGCGCCGCACCACAGTGCATCCATGGCGGCACTGGTCGGCGGCGGCTCTCTGCCGCGCCCGGGGGAAATATCCATGGCGC
ACAACGGCGTGCTGTTCCTTGATGAACTCCCCGAATTTGAACGGCGCACGCTGGACGCCCTGCGCGAACCTTTGGAGTCC
GGGGAAATTGTCATTTCGCGCGCCAGTGCCAAAGTCTGCTTCCCGGCGCGAATTCAGCTGATCGCCGCCATGAATCCCAG
CCCGACCGGCCACTATCAGGGCATGCATAACCGAACCCCGCCACAGCAGGTTCTGCGCTATCTGGGCCGGCTTTCCGGGC
CATTTCTCGACCGGTTCGATTTATCGATCGAAGTCCCCTTGCTGCCGCCCGGTACGCTCAGCAAACAGCAAGAGCCGGGA
GAAAGCAGCCAGCAGGTGCGCCAGCGCGTAATCGCGGCGCGGGAACGGCAATTGCAGCGCGCCGGAAAAATTAATGCCAT
TCTCGGCAAACGCGAAGTGGATCGAGATTGCCCATTGTGCGATGCCGACGCCCACTATCTGGAAACAACCTTGCTTAAGC
TGGGATTATCCGTACGCGCCTGGCATCGCATCCTCAAGGTAGCACGCACGCTGGCGGATTTAGCGGGAGAAAAACATATT
GCCCGCCACCATCTCAGCGAAGCATTAGGCTACCGTCGGATGGAACGCCTGCTGATCCAGCTACATCGCAGTCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

100

0.658
  comM Vibrio cholerae strain A1552

65.805

99.407

0.654
  comM Glaesserella parasuis strain SC1401

64.892

100

0.65
  comM Vibrio campbellii strain DS40M4

64.94

99.209

0.644
  comM Legionella pneumophila str. Paris

49.409

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.409

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.681

100

0.457