Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OLL86_RS09870 Genome accession   NZ_CP110225
Coordinates   2094041..2095579 (-) Length   512 a.a.
NCBI ID   WP_264779949.1    Uniprot ID   -
Organism   Gallibacterium anatis strain IMT49310     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2089041..2100579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS09860 (OLL86_09860) - 2091421..2092344 (-) 924 WP_320062263.1 transposase -
  OLL86_RS09865 (OLL86_09865) - 2092594..2093730 (-) 1137 WP_264779948.1 transposase -
  OLL86_RS11160 - 2093789..2093923 (+) 135 WP_406600108.1 transposase -
  OLL86_RS09870 (OLL86_09870) comM 2094041..2095579 (-) 1539 WP_264779949.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OLL86_RS09875 (OLL86_09875) lipA 2095724..2096686 (-) 963 WP_039094271.1 lipoyl synthase -
  OLL86_RS09880 (OLL86_09880) lipB 2096696..2097406 (-) 711 WP_018346351.1 lipoyl(octanoyl) transferase LipB -
  OLL86_RS09885 (OLL86_09885) ybeD 2097420..2097695 (-) 276 WP_026211015.1 DUF493 family protein YbeD -
  OLL86_RS09890 (OLL86_09890) - 2097912..2099096 (-) 1185 WP_013746144.1 serine hydrolase -
  OLL86_RS09895 (OLL86_09895) - 2099119..2099955 (-) 837 WP_018346349.1 septal ring lytic transglycosylase RlpA family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 56224.84 Da        Isoelectric Point: 9.7634

>NTDB_id=753199 OLL86_RS09870 WP_264779949.1 2094041..2095579(-) (comM) [Gallibacterium anatis strain IMT49310]
MSLAVVYSRASIGVQAPLITIEVHMSNGAPGLTLVGLPETTVKEARDRVRSALINANFVYPTQRITINLAPADLPKEGGR
FDLPIALGILAASGQIDAKRLQSFEFVGELALTGNLRGVQGVIPAILAANNAKRELIIAKQNAQEATLVANAQTYFATSL
LDVVAFLNQQQKLPIAQQLPPLSHSENTHLLDMTDIIGQQHAKRALLIAAAGQHNLLFLGPPGTGKTMLASRLTTLLPEM
TEQEAIETAAINSLVQHRLDYHYWKQRPFRSPHHSASMAALVGGGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALREP
LESGEIVISRTAAKVTFPAKFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQQLP
KDENSSEKLKQIVIRVREKQLSRSGKINAHLSGKEIEKYCKLNQDDAIFLENALNKLGLSVRAYHRILRVSRTIADLAGE
EQIQRIHLAEALGYRAMDRLLQRLTANINNAI

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=753199 OLL86_RS09870 WP_264779949.1 2094041..2095579(-) (comM) [Gallibacterium anatis strain IMT49310]
ATGTCATTAGCAGTTGTTTACAGCCGCGCCTCTATCGGAGTGCAGGCACCATTAATCACGATCGAAGTTCATATGAGTAA
CGGCGCGCCGGGGTTAACCTTGGTCGGCTTACCGGAAACCACCGTAAAAGAAGCAAGAGATCGTGTCCGCAGTGCATTAA
TCAATGCTAATTTTGTCTATCCGACACAACGCATTACCATCAATCTGGCACCGGCGGATCTGCCGAAAGAGGGCGGGCGC
TTTGATCTTCCCATCGCCTTAGGCATTTTGGCAGCTTCCGGGCAAATCGATGCTAAGCGGTTACAATCTTTCGAATTTGT
CGGTGAACTGGCACTTACCGGAAATTTACGTGGCGTACAAGGCGTTATTCCGGCTATTTTGGCGGCGAATAACGCAAAAC
GTGAATTAATTATTGCTAAACAGAACGCACAAGAAGCAACATTAGTTGCCAATGCTCAAACTTACTTTGCCACCTCATTA
TTGGACGTTGTCGCCTTTCTGAATCAACAACAAAAATTACCGATTGCACAACAATTACCGCCACTATCCCATTCTGAAAA
CACACATTTATTAGATATGACGGATATCATCGGGCAACAACACGCTAAACGGGCATTGCTCATTGCCGCCGCCGGACAGC
ATAATCTACTGTTTTTAGGGCCGCCCGGCACCGGCAAAACAATGCTGGCGAGTCGTTTAACCACTTTGTTACCGGAAATG
ACGGAACAGGAAGCAATTGAAACCGCTGCAATTAACAGTCTGGTTCAACATCGTTTGGATTATCATTATTGGAAACAACG
CCCTTTTCGCTCACCCCATCACAGTGCGTCAATGGCAGCATTAGTTGGTGGCGGCACTATTCCTAAACCGGGAGAAATTT
CCCTTGCCCATAATGGCGTGCTTTTTTTGGACGAATTGCCTGAGTTTGATCGCAAAGTACTTGATGCCTTACGGGAACCG
CTGGAAAGTGGCGAAATCGTGATCTCACGTACAGCGGCAAAAGTCACTTTCCCGGCAAAATTTCAACTCATTGCCGCAAT
GAACCCAAGCCCGACAGGGCATTACCAAGGCACACATAACCGCACCTCGCCGCAACAGATTATGCGCTACCTTAATCGGT
TATCCGGTCCATTTCTTGACCGCTTTGATCTGTCAATTGAAGTGCCGTTACTGCCACAAGGTACTTTGCAACAATTACCT
AAAGACGAAAACAGCAGTGAAAAATTAAAACAGATCGTCATCCGAGTAAGGGAGAAACAACTCTCTCGCAGTGGAAAAAT
CAATGCGCACTTATCCGGCAAAGAGATCGAAAAATATTGCAAATTAAACCAAGATGATGCGATTTTTCTTGAAAACGCCC
TGAATAAACTTGGACTTTCCGTCAGAGCTTATCATCGTATTTTGCGTGTTTCCCGCACCATCGCCGATCTGGCAGGTGAA
GAACAAATCCAACGCATTCATCTAGCTGAAGCACTAGGTTATCGTGCTATGGATCGATTATTACAGCGTTTAACCGCTAA
TATCAATAACGCCATTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

76.529

99.023

0.758
  comM Glaesserella parasuis strain SC1401

75.345

99.023

0.746
  comM Vibrio cholerae strain A1552

65.81

98.828

0.65
  comM Vibrio campbellii strain DS40M4

64.032

98.828

0.633
  comM Legionella pneumophila str. Paris

51.6

97.656

0.504
  comM Legionella pneumophila strain ERS1305867

51.6

97.656

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.967

99.805

0.469