Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   UKS_RS00105 Genome accession   NZ_AP021887
Coordinates   22071..22307 (+) Length   78 a.a.
NCBI ID   WP_156011310.1    Uniprot ID   -
Organism   Streptococcus sp. 116-D4     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 17071..27307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS00100 - 20395..21759 (-) 1365 Protein_14 transposase -
  UKS_RS00105 (UKS_00170) comW 22071..22307 (+) 237 WP_156011310.1 sigma(X)-activator ComW Regulator
  UKS_RS00110 (UKS_00180) - 22538..23824 (+) 1287 WP_004237599.1 adenylosuccinate synthase -
  UKS_RS00115 (UKS_00190) tadA 24024..24491 (+) 468 WP_156011311.1 tRNA adenosine(34) deaminase TadA -
  UKS_RS00125 (UKS_00200) - 24678..25121 (+) 444 WP_156013004.1 dUTP diphosphatase -
  UKS_RS00130 - 25072..25638 (+) 567 Protein_19 histidine phosphatase family protein -
  UKS_RS00135 (UKS_00220) radA 25652..27013 (+) 1362 WP_156011312.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9773.16 Da        Isoelectric Point: 6.6350

>NTDB_id=75316 UKS_RS00105 WP_156011310.1 22071..22307(+) (comW) [Streptococcus sp. 116-D4]
MLQSIYNQMTDFYNSIEEEYGTFFGDHFDWEHVHFKFLIYYLFRYSIGNHRDFIVYHYRVAYRLYLEKLIMKQGFVAC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=75316 UKS_RS00105 WP_156011310.1 22071..22307(+) (comW) [Streptococcus sp. 116-D4]
ATGCTACAAAGTATTTATAATCAGATGACAGATTTCTATAACAGTATTGAAGAAGAGTATGGTACGTTCTTCGGAGATCA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTGATTTATTATCTTTTCCGATATAGCATTGGAAATCATCGGGATTTTA
TTGTTTATCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGATAATGAAACAAGGTTTTGTTGCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis SK321

85.897

100

0.859
  comW Streptococcus mitis NCTC 12261

85.714

98.718

0.846
  comW Streptococcus pneumoniae Rx1

76.923

100

0.769
  comW Streptococcus pneumoniae D39

76.923

100

0.769
  comW Streptococcus pneumoniae R6

76.923

100

0.769
  comW Streptococcus pneumoniae TIGR4

76.923

100

0.769

Multiple sequence alignment