Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   QHG49_RS28330 Genome accession   NZ_CP123923
Coordinates   6387741..6387923 (+) Length   60 a.a.
NCBI ID   WP_370530590.1    Uniprot ID   -
Organism   Streptomyces sp. WP-1     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 6382741..6392923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG49_RS28300 (QHG49_28305) - 6382757..6383302 (+) 546 WP_037651166.1 arginine repressor -
  QHG49_RS28305 (QHG49_28310) - 6383392..6383979 (+) 588 WP_145483829.1 RNA polymerase sigma factor -
  QHG49_RS28310 (QHG49_28315) - 6383969..6384754 (+) 786 WP_145483832.1 zf-HC2 domain-containing protein -
  QHG49_RS28315 (QHG49_28320) - 6384777..6386621 (-) 1845 WP_301491720.1 ABC transporter ATP-binding protein -
  QHG49_RS28320 (QHG49_28325) - 6386698..6386904 (-) 207 WP_301491721.1 hypothetical protein -
  QHG49_RS28325 (QHG49_28330) - 6387000..6387708 (-) 709 Protein_5573 FAD:protein FMN transferase -
  QHG49_RS28330 (QHG49_28335) chiS 6387741..6387923 (+) 183 WP_370530590.1 sensor histidine kinase Regulator
  QHG49_RS28335 (QHG49_28340) - 6387977..6388690 (-) 714 WP_301491722.1 L,D-transpeptidase -
  QHG49_RS28340 (QHG49_28345) - 6388924..6390126 (+) 1203 WP_145483854.1 argininosuccinate synthase -
  QHG49_RS28345 (QHG49_28350) argH 6390243..6391670 (+) 1428 WP_301491723.1 argininosuccinate lyase -
  QHG49_RS28350 (QHG49_28355) - 6391867..6392838 (+) 972 WP_301491724.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6234.04 Da        Isoelectric Point: 11.7219

>NTDB_id=753095 QHG49_RS28330 WP_370530590.1 6387741..6387923(+) (chiS) [Streptomyces sp. WP-1]
MRSAVFERFARAGHRRHGDTPAMGAGLGLSIVSAVVEAHGGTVEAESRPGSTTFRVTLPA

Nucleotide


Download         Length: 183 bp        

>NTDB_id=753095 QHG49_RS28330 WP_370530590.1 6387741..6387923(+) (chiS) [Streptomyces sp. WP-1]
CTGCGCTCCGCCGTCTTCGAACGCTTCGCCCGCGCCGGCCACCGCCGCCACGGCGACACCCCCGCCATGGGCGCGGGCCT
CGGCCTGTCGATCGTCTCGGCGGTGGTGGAGGCACACGGCGGGACGGTGGAGGCCGAGAGCCGGCCGGGCTCCACGACGT
TCCGGGTCACCTTGCCCGCCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(4-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

42.857

93.333

0.4
  ciaH Streptococcus pneumoniae Rx1

36.066

100

0.367
  ciaH Streptococcus pneumoniae D39

36.066

100

0.367
  luxQ Vibrio cholerae strain A1552

36.066

100

0.367
  ciaH Streptococcus pneumoniae R6

36.066

100

0.367
  ciaH Streptococcus pneumoniae TIGR4

36.066

100

0.367
  covS Lactococcus lactis subsp. lactis strain DGCC12653

39.286

93.333

0.367