Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OH720_RS30965 Genome accession   NZ_CP110128
Coordinates   6849326..6850819 (+) Length   497 a.a.
NCBI ID   WP_272604010.1    Uniprot ID   -
Organism   Pseudomonas sp. WJP1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6844326..6855819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS30930 (OH720_30940) - 6844629..6845966 (-) 1338 WP_272604004.1 ammonium transporter -
  OH720_RS30935 (OH720_30945) glnK 6846002..6846340 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  OH720_RS30940 (OH720_30950) - 6846763..6847023 (+) 261 WP_272604005.1 accessory factor UbiK family protein -
  OH720_RS30945 (OH720_30955) - 6847416..6847940 (+) 525 WP_272604006.1 Bro-N domain-containing protein -
  OH720_RS30950 (OH720_30960) - 6847952..6848215 (-) 264 WP_272604007.1 HigA family addiction module antitoxin -
  OH720_RS30955 (OH720_30965) - 6848585..6848941 (+) 357 WP_336299061.1 hypothetical protein -
  OH720_RS30960 (OH720_30970) - 6848978..6849148 (+) 171 WP_272604009.1 hypothetical protein -
  OH720_RS30965 (OH720_30975) comM 6849326..6850819 (+) 1494 WP_272604010.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OH720_RS30970 (OH720_30980) - 6850826..6852037 (-) 1212 WP_272604011.1 aldose 1-epimerase family protein -
  OH720_RS30975 (OH720_30985) - 6852304..6853722 (+) 1419 WP_272604012.1 SrfA family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53225.29 Da        Isoelectric Point: 8.2076

>NTDB_id=752550 OH720_RS30965 WP_272604010.1 6849326..6850819(+) (comM) [Pseudomonas sp. WJP1]
MSLSIVHSRAQVGVDAPSVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPQRRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRSLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPIEPYVSNGLLYASKPYPDLNEVQGQQAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
SEALEVAAIQSVTSCVPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPTGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPPVKP
GEDSASAALIVADARERQQTRQGCANAFLDLPGLRKHCKLSTVDENWLETACERLNLSLRSAHRLLKVARTLADLEQANG
IRREHLAEALQYRPTTL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=752550 OH720_RS30965 WP_272604010.1 6849326..6850819(+) (comM) [Pseudomonas sp. WJP1]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGGTTGGCGTGGATGCTCCCTCTGTCACCGTTGAAGTCCATCTGGCCAA
TGGTTTGCCATCGCTGACCATGGTCGGGCTGCCCGAGGCGGCGGTGAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGCAACGGCGCATCACGTTGAATCTGGCACCGGCGGATTTGCCCAAGGATGGTGGGCGC
TTCGACCTGGCGATTGCGCTGGGGATTCTCTCGGCCAGCGTACAGGTGCCGACGTTGACGCTCGATGATGTGGAGTGCCT
GGGGGAGCTTGCCCTGTCTGGCGCGGTCCGGGCCGTGCGCGGTGTATTGCCCGCAGCATTGGCGGCGCGCAAGGCTGGGC
GTTCGCTGGTCGTACCGCGGGCCAACGCCGAGGAAGCATGCCTGGCGTCGGGCTTGAAGGTGATTGCGGTGGATCATTTG
CTGGAGGCGGTTGCGCATTTCAATGGGCATACGCCGATCGAGCCCTATGTCTCCAATGGTTTGCTCTACGCCAGCAAACC
CTATCCTGATTTGAATGAAGTGCAGGGTCAGCAGGCAGCCAAACGAGCGCTGTTGATTGCCGCCGCAGGTGCGCACAACC
TTCTGTTCAGCGGGCCGCCGGGGACCGGAAAAACCTTGTTGGCCAGTCGCCTGCCCGGGCTGCTGCCGCCGCTGTCGGAA
AGCGAAGCCCTGGAGGTCGCAGCCATTCAATCGGTCACCAGTTGTGTACCGCTGAGCCATTGGCCGCATCGGCCGTTTCG
CCAGCCTCACCACTCCGCCTCAGGGCCCGCGCTGGTGGGCGGCGGCTCGAAACCTCAGCCGGGCGAGATCACCCTCGCCC
ACCATGGTGTTTTGTTTCTTGATGAGCTTCCGGAATTTGAACGCAGGGTGCTTGAGGTGTTGAGAGAGCCCCTGGAGTCC
GGGCATATCGTGATTTCCCGGGCGAAGGATCGCGTACGGTTTCCAGCGCGGTTCCAGTTGGTGGCGGCGATGAATCCGTG
CCCCTGTGGATATCTTGGCGAACCTACCGGGCGCTGCTCCTGCACACCTGACATGGTTCAGCGCTATCGCAACAAGCTAT
CGGGCCCGCTGCTGGATCGGATCGACTTGCACCTGACCGTGGCACGGGAGGCCACGGCGCTGAATCCACCCGTGAAACCG
GGAGAGGACAGCGCCAGCGCTGCATTGATCGTGGCCGATGCACGCGAGCGCCAACAGACGCGTCAGGGCTGTGCCAATGC
CTTTCTCGATCTGCCGGGGCTTCGCAAGCACTGCAAGTTGTCCACAGTCGATGAAAACTGGCTGGAAACCGCTTGTGAAC
GACTCAATCTCTCCCTGCGATCAGCCCATCGACTGCTCAAGGTCGCGCGCACGCTGGCGGACCTTGAACAAGCCAACGGA
ATCAGACGCGAACATTTGGCCGAGGCGCTGCAATATCGACCGACAACGCTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.354

99.598

0.551
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Haemophilus influenzae Rd KW20

53.307

100

0.535
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50.602

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

100

0.465