Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GZH91_RS00545 Genome accession   NZ_AP021884
Coordinates   114527..116023 (+) Length   498 a.a.
NCBI ID   WP_147069710.1    Uniprot ID   A0A512L3D0
Organism   Sulfuriferula plumbiphila strain Gro7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 109527..121023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH91_RS00520 (SFPGR_01070) - 109857..110639 (+) 783 WP_147069704.1 DUF2189 domain-containing protein -
  GZH91_RS00525 (SFPGR_01080) - 110955..112376 (-) 1422 WP_174861806.1 ammonium transporter -
  GZH91_RS00530 (SFPGR_01090) glnK 112388..112726 (-) 339 WP_147069706.1 P-II family nitrogen regulator -
  GZH91_RS00535 (SFPGR_01100) - 112772..113953 (-) 1182 WP_161984124.1 outer membrane beta-barrel protein -
  GZH91_RS00540 (SFPGR_01110) - 114245..114517 (+) 273 WP_307723863.1 accessory factor UbiK family protein -
  GZH91_RS00545 (SFPGR_01120) comM 114527..116023 (+) 1497 WP_147069710.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GZH91_RS00550 (SFPGR_01130) lipA 116104..117036 (-) 933 WP_147069712.1 lipoyl synthase -
  GZH91_RS00555 (SFPGR_01140) lipB 117059..117670 (-) 612 WP_174861807.1 lipoyl(octanoyl) transferase LipB -
  GZH91_RS00560 (SFPGR_01150) - 117674..117937 (-) 264 WP_147069714.1 DUF493 family protein -
  GZH91_RS00565 (SFPGR_01160) - 117950..119086 (-) 1137 WP_147069716.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GZH91_RS00570 (SFPGR_01170) - 119121..119999 (-) 879 WP_147069718.1 septal ring lytic transglycosylase RlpA family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53131.10 Da        Isoelectric Point: 8.9391

>NTDB_id=75254 GZH91_RS00545 WP_147069710.1 114527..116023(+) (comM) [Sulfuriferula plumbiphila strain Gro7]
MGIAVLYSRALSGMDAPQVVVEAHLANGLPSFTIVGLPEAEVKESRDRVRAAIQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAHKLKDYEFAGELALTGELRPIRGALAMTLGAVSSGRAFVLPSASAQEAALVENAVVHPADSL
LAVCAHLAGQPPLPLQAVLPVALAQAHYPDFNEVKGQLGVKRALEIAAAGGHSVLMAGPPGTGKSMLAARFPGILPGMNE
REAIESAALHSLNGGFRIEHWKRRPYRSPHHTASAVALVGGGGIPRPGEISLAHHGVLFLDELPEFPRSVLEVLREPLES
GRITISRAARQADFPARFQLIAAMNPCPCGYLGHPTGKCRCTPDQIARYRGRISGPLLDRIDIQIEVPALSHDDLLRQSN
GETSAAIQIRVEAARARQIARQGKPNAELGSKEIDTHCVPDAAGEALLKHAIARFNLSARAYHRILKVARSVADLGDSEH
IATRHIAETIQYRRLAGG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=75254 GZH91_RS00545 WP_147069710.1 114527..116023(+) (comM) [Sulfuriferula plumbiphila strain Gro7]
ATGGGCATCGCCGTCCTCTATAGCCGGGCGCTGTCCGGCATGGACGCGCCGCAGGTGGTGGTGGAAGCGCACCTCGCCAA
CGGCCTGCCCAGCTTTACCATTGTCGGTTTGCCCGAGGCCGAGGTAAAAGAATCCCGCGACCGGGTGCGGGCGGCGATCC
AGAACGCACGCTTTGAATTCCCGGCGCGGCGCATCACCGTCAACCTCGCCCCGGCCGACTTGCCCAAGGAATCCGGGCGC
TTTGACCTGCCTATCGCGTTGGGCATCCTTGCCGCCTCCGGGCAGATTCCCGCCCATAAGCTGAAAGACTACGAATTCGC
CGGCGAACTGGCCCTGACCGGTGAGCTGCGCCCGATCCGCGGTGCGCTGGCGATGACCCTGGGTGCGGTTTCCAGCGGGC
GGGCCTTCGTCCTGCCCAGCGCCAGCGCGCAGGAAGCCGCGCTAGTGGAAAACGCCGTCGTCCACCCCGCCGATTCGCTG
CTGGCCGTATGTGCCCATCTTGCCGGACAACCCCCGCTTCCCCTGCAAGCCGTACTGCCAGTGGCGCTTGCACAAGCGCA
CTACCCGGATTTCAACGAAGTCAAAGGCCAGCTCGGCGTCAAGCGCGCATTGGAGATCGCCGCTGCCGGCGGCCACTCGG
TGCTGATGGCGGGGCCGCCGGGTACCGGCAAGTCCATGCTGGCGGCGCGCTTTCCTGGCATCCTGCCCGGCATGAACGAA
CGGGAAGCCATCGAATCTGCTGCATTGCATTCCTTGAATGGCGGCTTTCGCATTGAGCACTGGAAGCGCCGCCCCTACCG
CAGCCCGCACCACACCGCCTCTGCCGTGGCGCTGGTGGGCGGCGGCGGTATCCCACGCCCGGGTGAGATTTCGCTGGCGC
ACCATGGTGTGCTGTTCCTCGACGAGTTGCCGGAATTCCCGCGCAGCGTGCTGGAAGTGCTGCGCGAACCGCTCGAATCC
GGACGCATCACCATCTCGCGCGCCGCTCGGCAGGCCGATTTTCCGGCGCGCTTTCAATTGATCGCAGCGATGAACCCGTG
CCCATGCGGCTACCTCGGCCACCCCACTGGCAAGTGCCGCTGCACGCCGGACCAGATTGCGCGCTACCGGGGGCGCATCT
CCGGCCCGCTGCTCGATCGCATCGACATCCAGATCGAAGTCCCTGCGCTGTCGCACGACGATTTGTTGCGCCAGTCCAAC
GGCGAAACCAGCGCCGCGATACAGATCAGGGTGGAAGCCGCCCGTGCCCGCCAGATTGCGCGCCAGGGCAAGCCCAATGC
GGAACTGGGTAGCAAGGAAATCGACACCCATTGCGTACCGGATGCAGCGGGTGAGGCACTGCTCAAACACGCCATCGCGC
GCTTCAACCTGTCCGCCCGTGCCTACCATCGCATCCTCAAGGTAGCGCGCAGTGTGGCCGACCTGGGCGACAGCGAACAC
ATCGCCACGCGCCACATCGCCGAAACCATCCAGTATCGGCGCTTGGCAGGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512L3D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

99.398

0.552
  comM Vibrio campbellii strain DS40M4

54.949

99.398

0.546
  comM Haemophilus influenzae Rd KW20

53

100

0.532
  comM Glaesserella parasuis strain SC1401

51.703

100

0.518
  comM Legionella pneumophila str. Paris

49.899

99.799

0.498
  comM Legionella pneumophila strain ERS1305867

49.899

99.799

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.726

100

0.462

Multiple sequence alignment