Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D3P44_RS02385 Genome accession   NZ_CP110110
Coordinates   502468..503964 (-) Length   498 a.a.
NCBI ID   WP_212542825.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain Z8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497468..508964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P44_RS02375 (D3P44_002375) - 498715..500352 (+) 1638 WP_212542887.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  D3P44_RS02380 (D3P44_002380) - 500384..502351 (-) 1968 WP_061337909.1 BCCT family transporter -
  D3P44_RS02385 (D3P44_002385) comM 502468..503964 (-) 1497 WP_212542825.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D3P44_RS02390 (D3P44_002390) - 503996..504259 (-) 264 WP_043218200.1 accessory factor UbiK family protein -
  D3P44_RS02395 (D3P44_002395) glnK 504650..504988 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  D3P44_RS02400 (D3P44_002400) - 505026..506342 (+) 1317 WP_043218201.1 ammonium transporter -
  D3P44_RS02405 (D3P44_002405) - 506454..507704 (+) 1251 WP_061337907.1 ammonium transporter -
  D3P44_RS02410 (D3P44_002410) - 507849..508274 (+) 426 WP_061337906.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  D3P44_RS02415 (D3P44_002415) sutA 508350..508679 (+) 330 WP_061337905.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52548.42 Da        Isoelectric Point: 8.1412

>NTDB_id=752405 D3P44_RS02385 WP_212542825.1 502468..503964(-) (comM) [Stutzerimonas balearica strain Z8]
MSLALVHSRAQIGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGEPLAQLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAADHL
LEVAAHFSGQTPLAPYQAEGLLRQELPYPDLADVQGQLAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLGE
QEALEVAAIRSVAGHGPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPDQIQRYRGKLSGPLLDRIDLHLTVAREATSLNAPRLE
GQSSAAVAGQVAAARAVQQARQGCANAFLDLAGLRQHCRLSAEDQQWLEKACERLALSLRAAHRLLKVARTLADLEQAPG
ITRAHLAEALQYRPAATT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=752405 D3P44_RS02385 WP_212542825.1 502468..503964(-) (comM) [Stutzerimonas balearica strain Z8]
ATGTCCCTCGCCCTCGTCCACAGCCGTGCCCAGATAGGCGTCGAAGCGCCGGCGGTCACGGTCGAAGCCCATCTGGCCAA
CGGCCTGCCGTCACTGGCGCTGGTCGGACTGCCGGAGACGGCTGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCGATCC
TCACCTCGGGGTTCGATTTTCCCGCCCGCCGCATCACGCTGAACCTGGCTCCGGCCGACCTGCCGAAGGATGGCGGCCGT
TTCGACCTGGCCATTGCGCTCGGCATCCTCGCCGCCAGCGGCCAGCTGCCGGGCGAACCGCTGGCGCAACTGGAATGCCT
CGGCGAGCTCGCCCTGTCCGGCGCCTTGCGCCCGGTCCAGGGCGTACTCCCCGCAGCGCTCGCCGCACGCGCCGCCGGCC
GAGCCCTGCTGGTACCGCGAGCCAACGCCGAGGAAGCCAGCCTGGCCTCTGGCCTGACCGTCTACGCCGCCGATCATCTA
CTGGAGGTGGCTGCGCATTTTTCCGGCCAGACACCGCTGGCGCCCTACCAGGCCGAAGGCCTCCTGCGCCAGGAACTGCC
CTACCCCGACCTGGCTGACGTGCAAGGCCAGCTGGCGGCCAAGCGCGGCCTGCTGATTGCCGCCGCCGGTGCCCACAACC
TGCTGTTCTCCGGCCCGCCCGGAACCGGCAAGACGCTGCTGGCCAGCCGTCTGCCGGGCCTCCTGCCGCCGCTCGGCGAG
CAGGAGGCGCTGGAGGTGGCCGCTATTCGTTCGGTGGCCGGCCATGGTCCGCTCGAACACTGGCCACAACGACCGTTCCG
ACAGCCGCATCACAGCGCCTCGGGACCGGCGCTGGTCGGCGGTGGCAGCCGTCCGCAGCCCGGGGAAATCACCCTGGCAC
ACCAGGGTGTGCTGTTTCTCGACGAGCTCCCCGAGTTCGACCGCAAGGTGCTCGAGGTCCTGCGCGAACCGCTGGAGTCC
GGACACATCGTCATCGCCCGGGCTCGCGACAAGGTGCGCTTTCCCGCGCGCTTCCAGCTGGTCGCCGCCATGAATCCCTG
CCCCTGCGGCTATCTCGGCGACCCCAGCGGCCGCTGCCGCTGCACGCCGGACCAGATCCAGCGCTATCGCGGCAAACTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACGGTGGCGCGCGAAGCCACCTCGCTGAACGCGCCGCGCCTCGAG
GGGCAGAGCAGCGCCGCGGTGGCCGGCCAGGTCGCCGCGGCACGTGCCGTCCAGCAGGCGCGTCAGGGTTGTGCCAATGC
CTTTCTCGATCTTGCCGGCCTGCGCCAGCACTGCCGGCTGAGCGCCGAGGACCAGCAGTGGCTGGAGAAGGCCTGCGAGC
GGCTGGCGCTCTCGCTGCGCGCAGCGCATCGCCTGCTCAAGGTGGCACGCACCCTGGCCGACCTCGAACAGGCGCCGGGC
ATCACCCGCGCGCACCTCGCCGAAGCCCTGCAGTACCGCCCCGCGGCGACCACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Glaesserella parasuis strain SC1401

53.707

100

0.538
  comM Legionella pneumophila str. Paris

52.8

100

0.53
  comM Legionella pneumophila strain ERS1305867

52.8

100

0.53
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.347

100

0.46