Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SFSGTM_RS00865 Genome accession   NZ_AP021881
Coordinates   164292..165785 (-) Length   497 a.a.
NCBI ID   WP_162083506.1    Uniprot ID   -
Organism   Sulfuriferula nivalis strain SGTM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 159292..170785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFSGTM_RS00840 (SFSGTM_01560) - 159812..161833 (+) 2022 WP_162083501.1 M3 family metallopeptidase -
  SFSGTM_RS00845 (SFSGTM_01570) - 161872..162405 (+) 534 WP_162083502.1 glutaredoxin family protein -
  SFSGTM_RS00850 (SFSGTM_01580) xth 162402..163172 (+) 771 WP_162083503.1 exodeoxyribonuclease III -
  SFSGTM_RS00855 (SFSGTM_01590) - 163177..163647 (-) 471 WP_162083504.1 hypothetical protein -
  SFSGTM_RS00860 (SFSGTM_01600) - 163660..163959 (-) 300 WP_162083505.1 hypothetical protein -
  SFSGTM_RS00865 (SFSGTM_01610) comM 164292..165785 (-) 1494 WP_162083506.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SFSGTM_RS00870 (SFSGTM_01620) - 165797..166051 (-) 255 WP_162083507.1 accessory factor UbiK family protein -
  SFSGTM_RS00875 (SFSGTM_01630) - 166314..167075 (+) 762 WP_162083508.1 TorF family putative porin -
  SFSGTM_RS00880 (SFSGTM_01640) glnK 167154..167492 (+) 339 WP_162083509.1 P-II family nitrogen regulator -
  SFSGTM_RS00885 (SFSGTM_01650) - 167505..169001 (+) 1497 WP_162083510.1 ammonium transporter -
  SFSGTM_RS00890 (SFSGTM_01660) hda 169052..169717 (-) 666 WP_162083511.1 DnaA regulatory inactivator Hda -
  SFSGTM_RS00895 (SFSGTM_01670) - 169721..170098 (-) 378 WP_162083512.1 DUF971 domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53343.11 Da        Isoelectric Point: 8.4928

>NTDB_id=75231 SFSGTM_RS00865 WP_162083506.1 164292..165785(-) (comM) [Sulfuriferula nivalis strain SGTM]
MAIAVLHSRALTGMNAPEVIVEAHLANGLPSFTIVGLPEAEVKEARDRVRAAIQNSRFEFPVSRITVNLAPADLPKESGR
YDLPIALGILAASGQIPIASLKDYEFAGELALTGELRPIRGALAMTLGAVSSGRAFILPQASAAEAALVERAVVYPAASL
LAVCAHLTRTTLLTPEPHQTATEQAHYPDFSEVKGQAGVKRALEIAAAGAHSVLMSGPPGTGKSMLASRFSGILPKMNET
EAIESAALLSLNGGFRLQHWRQRPFRSPHHTASAVALVGGGSNPRPGEISLAHHGVLFLDELPEFPRTVLDVLREPLESG
NITISRATRQVDFPARFQLIAAMNPCPCGYLGHTSGKCRCTPDQISRYRGRLSGPLLDRIDIQIEVPSLNQDELLNAGTG
ESSTTIQQRVDTARGVQLARQGKTNAMLSSKEIDLYCAPDTAGITLIKNAISRLNLSARAYHRILKVARTVADLNHVTDI
TSQHIAEAIQYRRLTHT

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=75231 SFSGTM_RS00865 WP_162083506.1 164292..165785(-) (comM) [Sulfuriferula nivalis strain SGTM]
ATGGCGATTGCGGTACTACATAGTCGCGCACTCACGGGGATGAATGCGCCTGAAGTTATTGTTGAGGCGCATTTAGCTAA
TGGTTTACCCAGTTTTACTATAGTGGGTCTACCTGAAGCAGAAGTAAAAGAGGCACGTGACCGAGTGCGTGCCGCCATAC
AAAATTCACGATTTGAATTTCCTGTTAGTCGCATCACCGTCAATCTTGCCCCTGCAGACTTACCCAAAGAATCAGGCCGC
TATGACTTGCCTATTGCATTAGGTATATTAGCTGCATCAGGGCAAATCCCTATTGCCAGTTTAAAAGATTATGAATTCGC
TGGAGAACTGGCACTTACGGGTGAATTACGCCCGATACGCGGTGCATTAGCTATGACTTTGGGCGCCGTTTCCAGCGGTC
GCGCTTTTATCTTGCCACAGGCTAGCGCTGCCGAAGCGGCGTTAGTAGAACGTGCTGTCGTGTATCCTGCCGCATCTTTA
CTCGCGGTATGCGCGCATTTAACTCGAACTACACTATTAACACCCGAGCCCCACCAAACAGCTACCGAGCAGGCGCATTA
TCCCGATTTTAGTGAAGTCAAAGGCCAAGCTGGTGTTAAACGCGCACTCGAAATTGCGGCTGCAGGCGCGCACTCCGTAT
TAATGTCTGGACCTCCCGGGACTGGTAAATCCATGCTGGCAAGTCGTTTTTCTGGCATTTTACCCAAGATGAATGAAACT
GAAGCGATAGAATCTGCCGCGCTACTATCACTCAATGGCGGGTTTCGTCTCCAGCATTGGCGGCAACGTCCATTTCGCTC
GCCGCACCATACAGCCTCTGCCGTTGCATTAGTGGGTGGAGGCAGCAATCCGCGCCCTGGTGAAATTTCATTAGCGCATC
ATGGTGTATTATTTTTAGATGAACTGCCCGAATTTCCAAGAACGGTGCTTGATGTACTGCGTGAGCCATTAGAATCTGGA
AACATCACCATCTCACGCGCGACTCGGCAAGTCGATTTTCCTGCAAGATTTCAACTCATTGCCGCAATGAACCCATGCCC
TTGTGGATATTTAGGCCATACATCAGGCAAATGTCGTTGCACGCCAGATCAGATTTCGCGTTATCGTGGCCGACTTTCAG
GCCCATTGTTAGATCGCATTGACATACAAATTGAAGTGCCCAGCTTAAATCAGGACGAGCTGCTCAATGCTGGCACTGGA
GAATCCAGCACAACCATACAACAGCGTGTCGACACTGCACGTGGCGTGCAATTAGCACGCCAAGGCAAAACCAACGCCAT
GCTGAGCAGTAAGGAAATTGATTTGTACTGCGCCCCCGATACCGCCGGTATAACTTTAATCAAAAATGCCATTAGCCGCT
TAAATTTATCTGCCCGCGCTTATCACCGCATACTTAAAGTCGCGCGCACAGTGGCTGACCTAAACCATGTGACCGACATC
ACCAGTCAACACATTGCTGAAGCCATACAATATCGTCGCCTGACACACACCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Vibrio campbellii strain DS40M4

54.418

100

0.545
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Glaesserella parasuis strain SC1401

52.705

100

0.529
  comM Legionella pneumophila str. Paris

51.6

100

0.519
  comM Legionella pneumophila strain ERS1305867

51.6

100

0.519
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.008

100

0.485

Multiple sequence alignment