Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   OKW88_RS06045 Genome accession   NZ_CP110105
Coordinates   1217714..1218010 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain CF03     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1212714..1223010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS06000 (OKW88_05985) tasA 1213122..1213907 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  OKW88_RS06005 (OKW88_05990) sipW 1213971..1214543 (-) 573 WP_003230181.1 signal peptidase I SipW -
  OKW88_RS06010 (OKW88_05995) tapA 1214527..1215288 (-) 762 WP_342006576.1 amyloid fiber anchoring/assembly protein TapA -
  OKW88_RS06015 (OKW88_06000) yqzG 1215560..1215886 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  OKW88_RS06020 (OKW88_06005) spoIITA 1215928..1216107 (-) 180 WP_072175549.1 YqzE family protein -
  OKW88_RS06025 (OKW88_06010) comGG 1216178..1216552 (-) 375 WP_029317914.1 ComG operon protein ComGG Machinery gene
  OKW88_RS06030 (OKW88_06015) comGF 1216553..1216936 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  OKW88_RS06035 (OKW88_06020) comGE 1216962..1217309 (-) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  OKW88_RS06040 (OKW88_06025) comGD 1217293..1217724 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  OKW88_RS06045 (OKW88_06030) comGC 1217714..1218010 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  OKW88_RS06050 (OKW88_06035) comGB 1218024..1219061 (-) 1038 WP_015714257.1 comG operon protein ComGB Machinery gene
  OKW88_RS06055 (OKW88_06040) comGA 1219048..1220118 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  OKW88_RS06060 (OKW88_06045) - 1220331..1220528 (-) 198 WP_342006575.1 hypothetical protein -
  OKW88_RS06065 (OKW88_06050) corA 1220530..1221483 (-) 954 WP_004399136.1 magnesium transporter CorA -
  OKW88_RS06070 (OKW88_06055) yqhB 1221626..1222951 (+) 1326 WP_342006574.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=752264 OKW88_RS06045 WP_003230162.1 1217714..1218010(-) (comGC) [Bacillus subtilis strain CF03]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=752264 OKW88_RS06045 WP_003230162.1 1217714..1218010(-) (comGC) [Bacillus subtilis strain CF03]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378