Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   OKW88_RS06050 Genome accession   NZ_CP110105
Coordinates   1218024..1219061 (-) Length   345 a.a.
NCBI ID   WP_015714257.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213024..1224061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS06000 (OKW88_05985) tasA 1213122..1213907 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  OKW88_RS06005 (OKW88_05990) sipW 1213971..1214543 (-) 573 WP_003230181.1 signal peptidase I SipW -
  OKW88_RS06010 (OKW88_05995) tapA 1214527..1215288 (-) 762 WP_342006576.1 amyloid fiber anchoring/assembly protein TapA -
  OKW88_RS06015 (OKW88_06000) yqzG 1215560..1215886 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  OKW88_RS06020 (OKW88_06005) spoIITA 1215928..1216107 (-) 180 WP_072175549.1 YqzE family protein -
  OKW88_RS06025 (OKW88_06010) comGG 1216178..1216552 (-) 375 WP_029317914.1 ComG operon protein ComGG Machinery gene
  OKW88_RS06030 (OKW88_06015) comGF 1216553..1216936 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  OKW88_RS06035 (OKW88_06020) comGE 1216962..1217309 (-) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  OKW88_RS06040 (OKW88_06025) comGD 1217293..1217724 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  OKW88_RS06045 (OKW88_06030) comGC 1217714..1218010 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  OKW88_RS06050 (OKW88_06035) comGB 1218024..1219061 (-) 1038 WP_015714257.1 comG operon protein ComGB Machinery gene
  OKW88_RS06055 (OKW88_06040) comGA 1219048..1220118 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  OKW88_RS06060 (OKW88_06045) - 1220331..1220528 (-) 198 WP_342006575.1 hypothetical protein -
  OKW88_RS06065 (OKW88_06050) corA 1220530..1221483 (-) 954 WP_004399136.1 magnesium transporter CorA -
  OKW88_RS06070 (OKW88_06055) yqhB 1221626..1222951 (+) 1326 WP_342006574.1 hemolysin family protein -
  OKW88_RS06075 (OKW88_06060) rsbRD 1223008..1223844 (-) 837 WP_173614187.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39733.22 Da        Isoelectric Point: 9.7900

>NTDB_id=752265 OKW88_RS06050 WP_015714257.1 1218024..1219061(-) (comGB) [Bacillus subtilis strain CF03]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDTVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGKSIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=752265 OKW88_RS06050 WP_015714257.1 1218024..1219061(-) (comGB) [Bacillus subtilis strain CF03]
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATACGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTAAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

99.071

93.623

0.928