Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   OU418_RS21240 Genome accession   NZ_CP123621
Coordinates   4085008..4087191 (+) Length   727 a.a.
NCBI ID   WP_307735955.1    Uniprot ID   -
Organism   Bacillus subtilis strain RLI2019     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 4080008..4092191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS21215 (OU418_21225) htpG 4080933..4082813 (-) 1881 WP_003243561.1 molecular chaperone HtpG -
  OU418_RS21220 (OU418_21230) - 4082981..4083232 (-) 252 WP_003244458.1 hypothetical protein -
  OU418_RS21225 (OU418_21235) yxbG 4083349..4084158 (+) 810 WP_041850312.1 SDR family oxidoreductase -
  OU418_RS21230 (OU418_21240) - 4084460..4084657 (+) 198 WP_040081241.1 Blp family class II bacteriocin -
  OU418_RS21235 (OU418_21245) - 4084681..4084926 (+) 246 WP_040081239.1 Blp family class II bacteriocin -
  OU418_RS21240 (OU418_21250) comA/nlmT 4085008..4087191 (+) 2184 WP_307735955.1 peptidase domain-containing ABC transporter Regulator
  OU418_RS21245 (OU418_21255) - 4087192..4088661 (+) 1470 WP_041850310.1 HlyD family efflux transporter periplasmic adaptor subunit -
  OU418_RS21250 (OU418_21260) yxbF 4089179..4090321 (-) 1143 WP_041850309.1 TetR/AcrR family transcriptional regulator -
  OU418_RS21255 (OU418_21265) aldX 4090464..4091801 (+) 1338 WP_041850308.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 82167.07 Da        Isoelectric Point: 8.8892

>NTDB_id=751499 OU418_RS21240 WP_307735955.1 4085008..4087191(+) (comA/nlmT) [Bacillus subtilis strain RLI2019]
MFFKKYQYVKQIDEKDCGAACLATILKHYGSKLSINKIRDIAGTDKQGTSALGLVRAAEQLGFSAKGVKADKTALEEPFT
LPAIAHIILNGQLLHYVVIHKITKDQIIIADPGRGIIKYTKKEFLEVWTGILILLTPSETYKIHVETSTIRSDIFKLILH
QKSLIIHTILASFIITVFGIMGTFYFQTVIDEILPNRLNSTLHILSFGLIIMYLFKVLLTAFRQYLMILLGQKLSISIMF
GYFKHVLSLPMKFFSTRKIGEIISRFNDASKVIDAIISASLSVVLDTVMLVMVGIFLYLQNTTLFLITLAFIPFYVLTVW
FFMKPYESINNTEMENNAQLTSKIVETLNGIETIKAYNAEYMMSYETEKRFVKYLRSAFKHGVIDNLQNSIKMFLDLASG
AFILWIGSTQVMKGTLSIGQLITYNALLTYFLNPLQNIIGLQSKLQSASVASKRLGEILEVEHEIKDKDAQITTPGSING
PIEFIKINFRYGTRRLILKDITLRIDKGEKVAFIGESGSGKSTLTKLIMKFYTAESGDILINGYHINDIHAHSLRESISY
IPQESHFIQGSIFENLLLGNSGSFTFEEIIEVCKQTNVHDFVNDLPMRYDTLVEENGSNLSGGQKQRLAIARALLRKPNI
LIMDESTSNLDTTTEQGISKMIYDQTVGITTIIIAHRLSTIMNCDKIFVMENGEIIEYGNHNDLLKKKGKYYELWENQMP
SRGMVTI

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=751499 OU418_RS21240 WP_307735955.1 4085008..4087191(+) (comA/nlmT) [Bacillus subtilis strain RLI2019]
ATGTTCTTTAAAAAGTACCAATATGTAAAACAAATTGATGAAAAAGACTGTGGAGCAGCTTGTCTAGCCACTATATTGAA
GCATTACGGCTCCAAATTATCAATAAATAAAATTCGAGATATTGCGGGAACAGATAAACAAGGCACAAGCGCACTTGGAC
TAGTCAGAGCAGCTGAACAATTAGGCTTTTCAGCAAAAGGAGTAAAAGCTGACAAAACAGCTTTAGAAGAACCCTTTACA
CTGCCGGCTATTGCACATATCATTCTTAATGGACAATTATTACATTATGTTGTTATTCATAAAATTACAAAAGACCAGAT
TATCATTGCAGATCCTGGCCGCGGAATCATTAAGTACACAAAAAAAGAATTTTTAGAGGTTTGGACAGGAATCTTAATTT
TACTGACTCCTTCTGAAACATATAAGATCCATGTAGAGACCAGTACTATACGAAGTGATATATTCAAATTAATACTTCAT
CAAAAATCATTGATCATCCACACAATTTTAGCATCCTTTATCATTACAGTTTTCGGTATTATGGGGACTTTTTATTTTCA
AACGGTCATTGATGAGATTTTACCAAATAGATTGAATAGCACGTTACATATACTTTCATTCGGCCTCATCATTATGTACT
TATTTAAAGTCCTTTTAACAGCCTTTAGGCAATATTTAATGATATTATTGGGCCAAAAATTAAGTATTTCAATAATGTTT
GGTTATTTCAAACATGTACTTAGCTTACCGATGAAGTTTTTTAGCACTAGAAAGATCGGGGAGATTATATCTAGATTTAA
TGATGCTAGCAAAGTAATTGATGCTATTATTAGCGCCTCTCTATCAGTAGTACTTGATACAGTAATGCTTGTAATGGTAG
GCATCTTTTTATATCTACAAAATACAACTTTATTTTTAATTACATTGGCTTTTATCCCATTTTATGTTCTTACAGTTTGG
TTTTTTATGAAGCCATATGAATCCATCAACAATACTGAAATGGAAAACAATGCTCAGCTGACTTCAAAAATAGTTGAGAC
ACTTAACGGTATTGAAACAATTAAAGCATATAATGCTGAATATATGATGTCATATGAGACAGAAAAGAGATTTGTGAAAT
ATTTGCGCTCTGCTTTTAAGCATGGAGTTATCGATAATCTTCAAAATTCTATTAAAATGTTTTTGGATTTAGCAAGTGGA
GCATTCATATTGTGGATTGGTTCAACTCAAGTGATGAAAGGAACTCTTTCAATAGGTCAGCTCATTACATACAATGCATT
GTTAACATATTTTTTGAATCCTTTACAGAACATAATAGGCCTTCAATCGAAACTCCAGTCAGCTTCTGTTGCTTCTAAAC
GACTGGGAGAAATACTAGAAGTAGAACACGAAATAAAAGATAAGGATGCTCAAATAACAACGCCAGGGTCTATTAATGGC
CCAATTGAATTTATTAAAATTAACTTTCGATATGGTACTCGGCGACTAATCCTAAAAGATATTACACTACGTATAGATAA
AGGGGAGAAAGTCGCTTTTATTGGAGAGAGCGGTTCCGGAAAATCTACTCTAACTAAGCTCATAATGAAATTTTATACAG
CTGAGTCTGGTGATATTTTAATTAATGGTTATCATATCAATGATATTCATGCTCATTCATTAAGAGAAAGTATAAGTTAT
ATCCCTCAAGAATCTCACTTTATACAGGGTTCCATTTTTGAAAACCTTCTGCTCGGTAACTCAGGCAGTTTTACCTTTGA
AGAGATTATAGAAGTATGCAAACAAACAAATGTACACGATTTTGTCAATGATTTACCAATGAGATACGATACTCTCGTAG
AGGAAAACGGGTCTAATTTATCTGGAGGCCAGAAGCAAAGACTCGCAATTGCCAGAGCATTATTAAGAAAACCTAACATT
CTCATAATGGATGAATCAACAAGCAATCTCGATACGACTACCGAACAGGGAATATCAAAAATGATATACGATCAGACTGT
TGGTATAACTACGATTATAATCGCTCACCGTTTGAGTACAATTATGAATTGTGACAAAATATTTGTCATGGAAAATGGAG
AAATCATAGAGTATGGGAACCACAATGATTTATTGAAGAAAAAAGGCAAGTACTATGAGTTGTGGGAGAACCAAATGCCA
TCCAGAGGGATGGTGACTATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(498-648)

Peptidase C39 family (Peptidase_C39)

(5-139)

ABC transporter transmembrane region (ABC_membrane)

(168-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

42.559

98.9

0.421
  comA Streptococcus mitis SK321

41.864

98.9

0.414
  comA Streptococcus mitis NCTC 12261

41.864

98.9

0.414
  comA Streptococcus pneumoniae R6

41.725

98.9

0.413
  comA Streptococcus pneumoniae Rx1

41.725

98.9

0.413
  comA Streptococcus gordonii str. Challis substr. CH1

41.725

98.9

0.413
  comA Streptococcus pneumoniae D39

41.725

98.9

0.413
  comA Streptococcus pneumoniae TIGR4

41.586

98.9

0.411