Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OHU65_RS26615 Genome accession   NZ_CP109859
Coordinates   5093658..5094158 (-) Length   166 a.a.
NCBI ID   WP_013059914.1    Uniprot ID   A0A0B6A5N1
Organism   Priestia megaterium strain 207     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5088658..5099158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU65_RS26595 (OHU65_26595) rplI 5089810..5090259 (-) 450 WP_264408725.1 50S ribosomal protein L9 -
  OHU65_RS26600 (OHU65_26600) - 5090256..5092229 (-) 1974 WP_264408726.1 DHH family phosphoesterase -
  OHU65_RS26605 (OHU65_26605) - 5092266..5093213 (-) 948 WP_264408727.1 YybS family protein -
  OHU65_RS26610 (OHU65_26610) rpsR 5093352..5093591 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  OHU65_RS26615 (OHU65_26615) ssbA 5093658..5094158 (-) 501 WP_013059914.1 single-stranded DNA-binding protein Machinery gene
  OHU65_RS26620 (OHU65_26620) rpsF 5094207..5094494 (-) 288 WP_013059915.1 30S ribosomal protein S6 -
  OHU65_RS26625 (OHU65_26625) ychF 5094684..5095784 (-) 1101 WP_014457678.1 redox-regulated ATPase YchF -
  OHU65_RS26630 (OHU65_26630) - 5095955..5096152 (-) 198 WP_013059917.1 DUF951 domain-containing protein -
  OHU65_RS26635 (OHU65_26635) - 5096167..5097060 (-) 894 WP_116741587.1 mechanosensitive ion channel family protein -
  OHU65_RS26640 (OHU65_26640) - 5097128..5098141 (-) 1014 WP_014457676.1 membrane protein -
  OHU65_RS26645 (OHU65_26645) yyaC 5098228..5098848 (+) 621 WP_221785922.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18132.76 Da        Isoelectric Point: 4.6529

>NTDB_id=750299 OHU65_RS26615 WP_013059914.1 5093658..5094158(-) (ssbA) [Priestia megaterium strain 207]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=750299 OHU65_RS26615 WP_013059914.1 5093658..5094158(-) (ssbA) [Priestia megaterium strain 207]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAATTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGATGGTCGTCGTGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAATTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCT
GATGACGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6A5N1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.765
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Vibrio cholerae strain A1552

33.889

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367