Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QEO90_RS03920 Genome accession   NZ_CP123311
Coordinates   805495..806721 (-) Length   408 a.a.
NCBI ID   WP_049144533.1    Uniprot ID   -
Organism   Escherichia coli strain AREA_R505     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 800495..811721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEO90_RS03900 (QEO90_03900) - 801576..802481 (+) 906 WP_249981502.1 hypothetical protein -
  QEO90_RS03905 (QEO90_03905) - 802481..803236 (+) 756 WP_049144534.1 hypothetical protein -
  QEO90_RS03910 (QEO90_03910) galE 803245..804258 (+) 1014 WP_000115194.1 UDP-glucose 4-epimerase GalE -
  QEO90_RS03915 (QEO90_03915) - 804411..805444 (+) 1034 Protein_769 IS481 family transposase -
  QEO90_RS03920 (QEO90_03920) kpsS 805495..806721 (-) 1227 WP_049144533.1 capsule biosynthesis protein Regulator
  QEO90_RS03925 (QEO90_03925) - 806756..808783 (-) 2028 WP_049144532.1 capsular polysaccharide biosynthesis protein -
  QEO90_RS03930 (QEO90_03930) kdsB 808780..809520 (-) 741 WP_049144531.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QEO90_RS03935 (QEO90_03935) - 809530..811206 (-) 1677 WP_001606112.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 48888.51 Da        Isoelectric Point: 10.0713

>NTDB_id=750182 QEO90_RS03920 WP_049144533.1 805495..806721(-) (kpsS) [Escherichia coli strain AREA_R505]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPSWLQDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGDRFFITKKDF
IKEKHYMY

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=750182 QEO90_RS03920 WP_049144533.1 805495..806721(-) (kpsS) [Escherichia coli strain AREA_R505]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATATCTGGCTTACTACCAAACGCCGAAAGAGTTTCCTAGTTGGTTGCAAGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGGCTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGATAGATTTTTTATTACAAAGAAGGATTTT
ATAAAAGAAAAACATTATATGTATTAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.547

97.304

0.385