Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OH655_RS00545 Genome accession   NZ_CP109853
Coordinates   118602..120122 (-) Length   506 a.a.
NCBI ID   WP_264441863.1    Uniprot ID   -
Organism   Pantoea dispersa strain ESL4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 113602..125122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH655_RS00535 (OH655_00535) hdfR 117292..118113 (-) 822 WP_031279770.1 HTH-type transcriptional regulator HdfR -
  OH655_RS00540 (OH655_00540) - 118235..118573 (+) 339 WP_021507919.1 DUF413 domain-containing protein -
  OH655_RS00545 (OH655_00545) comM 118602..120122 (-) 1521 WP_264441863.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OH655_RS00550 (OH655_00550) ilvL 120451..120549 (+) 99 WP_071813600.1 ilv operon leader peptide -
  OH655_RS00555 (OH655_00555) ilvG 120699..122345 (+) 1647 WP_264441864.1 acetolactate synthase 2 catalytic subunit -
  OH655_RS00560 (OH655_00560) ilvM 122342..122599 (+) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  OH655_RS00565 (OH655_00565) - 122618..123547 (+) 930 WP_021507916.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54959.17 Da        Isoelectric Point: 7.8673

>NTDB_id=750166 OH655_RS00545 WP_264441863.1 118602..120122(-) (comM) [Pantoea dispersa strain ESL4]
MSLSKVLTRAALGVQAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPGDKLAHYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNQTALTVAHYQPETVPHEQQDLSDIIGQQQGRRALEITAAGGHNLLLLGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGTLHHQWRRRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERKALDALREPIES
GEIAISRSRAKVTFPARFQLIGAMNPSPTGHYQGNHNRCTPQQVLRYLSRLSGPFLDRFDLSLEIPLLPGGSLSQKQQHS
ETSAQVRARVMAARAIQMARAGKVNAQLSNPEIARDCVLQQQDAEWLEEILNALGLSVRAWQRILKVARTIADLAGERQV
TRQHLQEAVGYRSIDRLLIYLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=750166 OH655_RS00545 WP_264441863.1 118602..120122(-) (comM) [Pantoea dispersa strain ESL4]
ATGTCTTTATCGAAAGTATTAACACGCGCGGCGCTCGGAGTGCAGGCTCCACTGGTGACGATTGAAGTGCATATCAGCAA
CGGTCTGCCAGCATTGACGCTGGTTGGTCTGCCGGAAACCACCGTCAAAGAAGCCCGCGAACGCGTGCGCAGCGCCATTA
TCAATAGCGGTTTCACCTTTCCGGCGAAGCGCGTCACCATTAATCTCGCGCCAGCTGATTTACCTAAAGAGGGTGGGCGC
TACGACCTGCCGATCGCTATCGCCATTCTCGCGGCCTCAGAGCAGCTGCCAGGCGATAAGCTGGCCCATTATGAGTTCCT
GGGTGAGCTGGCGCTAAACGGCGCGCTGTGTGGCGTTCAGGCCGCGATTCCTGCTGCCATGGCGGCGCTGCAGGCCGGAC
GTCAGATGGTCTTAGCGGAGCAGAATCAACAGGATGTCGGCCTGATACAACAGGGTGAAACGCTGGTGGGCAAGCATCTG
GTGGAGATCTGCGCTTTCCTGCATAACCAGACGGCGCTGACGGTCGCCCATTACCAGCCTGAAACGGTGCCGCACGAGCA
GCAGGACCTGAGCGATATTATTGGCCAGCAGCAGGGACGGCGCGCGCTGGAAATTACCGCCGCCGGTGGCCATAACCTGT
TGCTGCTGGGCCCGCCCGGCACCGGTAAGACCATGCTGGCAACCCGACTGCCCGGCATTATGCCGCCGCTGGATGACCAG
GAAGCGCTGGAGTGCGCCGCAATTGCCAGCCTGGTCAGCAGCGGTACGCTACATCATCAGTGGCGTAGACGGCCGTTCAG
AGCGCCTCATCACAGCGCATCGCTGTATGCGCTGGTCGGCGGAGGATCCCTGCCGCGGCCGGGCGAAATTTCGCTGGCGC
ACAATGGGGTGCTGTTTCTTGATGAACTGCCCGAGTTTGAGCGCAAAGCGCTGGATGCGTTACGCGAGCCGATTGAGTCC
GGTGAAATCGCCATTTCCCGTTCCCGCGCCAAAGTCACTTTCCCTGCGCGCTTTCAGCTGATTGGTGCAATGAATCCCAG
CCCGACGGGCCATTATCAGGGGAATCATAATCGCTGCACGCCGCAGCAGGTGCTGCGCTATCTCAGCCGGCTGTCTGGCC
CGTTTCTGGATCGCTTCGACCTGTCGCTGGAGATTCCGCTGCTACCGGGCGGCTCGCTCAGCCAGAAGCAGCAGCACAGC
GAAACCAGCGCGCAGGTGCGCGCCCGCGTAATGGCCGCCCGGGCGATACAGATGGCACGCGCGGGCAAGGTGAATGCGCA
GCTGTCGAATCCGGAGATCGCCCGTGATTGTGTGTTACAGCAGCAGGACGCGGAATGGCTGGAGGAGATCCTGAATGCAC
TGGGATTATCGGTGCGTGCGTGGCAGCGTATCTTAAAGGTGGCGAGAACCATCGCAGATTTAGCGGGTGAACGGCAGGTT
ACGCGTCAGCATCTGCAGGAGGCGGTGGGATATCGCAGTATCGATCGTTTACTGATTTACCTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.028

99.407

0.617
  comM Glaesserella parasuis strain SC1401

61.63

99.407

0.613
  comM Vibrio cholerae strain A1552

61.355

99.209

0.609
  comM Vibrio campbellii strain DS40M4

60.558

99.209

0.601
  comM Legionella pneumophila str. Paris

48.29

98.221

0.474
  comM Legionella pneumophila strain ERS1305867

48.29

98.221

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

100

0.429