Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOF60_RS24270 Genome accession   NZ_CP109811
Coordinates   4816171..4816656 (-) Length   161 a.a.
NCBI ID   WP_192472727.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain SBJS01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4811171..4821656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOF60_RS24250 (FOF60_24250) rplI 4812036..4812485 (-) 450 WP_192472724.1 50S ribosomal protein L9 -
  FOF60_RS24255 (FOF60_24255) - 4812482..4814455 (-) 1974 WP_192472725.1 DHH family phosphoesterase -
  FOF60_RS24260 (FOF60_24260) - 4814486..4815427 (-) 942 WP_192472726.1 YybS family protein -
  FOF60_RS24265 (FOF60_24265) rpsR 4815884..4816120 (-) 237 WP_079507585.1 30S ribosomal protein S18 -
  FOF60_RS24270 (FOF60_24270) ssbA 4816171..4816656 (-) 486 WP_192472727.1 single-stranded DNA-binding protein Machinery gene
  FOF60_RS24275 (FOF60_24275) rpsF 4816735..4817022 (-) 288 WP_192472728.1 30S ribosomal protein S6 -
  FOF60_RS24280 (FOF60_24280) ychF 4817546..4818646 (-) 1101 WP_192472729.1 redox-regulated ATPase YchF -
  FOF60_RS24285 (FOF60_24285) - 4819038..4821038 (-) 2001 WP_192472730.1 molybdopterin-dependent oxidoreductase -
  FOF60_RS24290 (FOF60_24290) - 4821122..4821316 (-) 195 WP_192472731.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17854.63 Da        Isoelectric Point: 4.8013

>NTDB_id=749520 FOF60_RS24270 WP_192472727.1 4816171..4816656(-) (ssbA) [Mesobacillus jeotgali strain SBJS01]
MMNRVILVGRLTKDPELRFTPNGVAVATFTLAVNRSFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRVQTR
SYEGQDGKRVYVTEVLAESVQFLEPKGQSSDRGDSGYSRQNDQGSPFGNQNQRQNQGYTKTDEDPFAGGGQIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=749520 FOF60_RS24270 WP_192472727.1 4816171..4816656(-) (ssbA) [Mesobacillus jeotgali strain SBJS01]
ATGATGAATCGTGTCATTCTTGTTGGCCGTTTGACCAAGGATCCTGAATTACGTTTCACACCGAATGGAGTTGCGGTGGC
TACTTTCACACTTGCGGTAAATCGTTCATTTACCAACCAGCAGGGGGAAAGAGAAGCTGACTTCATCAACTGTGTGGTAT
GGCGCCGTCCAGCCGAAAACGTTGCAAACTTCTTGAAGAAGGGCAGCCTTGCAGGTGTTGATGGACGCGTTCAAACTCGC
AGCTATGAAGGACAAGATGGTAAGCGTGTATACGTTACAGAAGTTCTTGCTGAGAGTGTTCAGTTCCTTGAGCCAAAAGG
ACAGTCTTCTGACAGAGGGGATAGCGGTTATTCCCGTCAAAATGATCAAGGATCCCCATTCGGGAATCAGAATCAACGAC
AAAACCAAGGTTATACAAAAACAGATGAAGATCCATTTGCAGGTGGCGGCCAAATCGACATTTCAGATGATGATCTTCCA
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.286

100

0.764
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

65.839

0.422
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.18

75.776

0.373
  ssbB/cilA Streptococcus pneumoniae TIGR4

50

72.05

0.36