Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AZSP09_RS11775 Genome accession   NZ_AP021844
Coordinates   2515469..2516977 (+) Length   502 a.a.
NCBI ID   WP_152090141.1    Uniprot ID   A0A5H2Z183
Organism   Azospira sp. I09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2510469..2521977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZSP09_RS11750 (AZSP09_23240) purU 2511045..2511905 (+) 861 WP_014235872.1 formyltetrahydrofolate deformylase -
  AZSP09_RS11755 (AZSP09_23250) amt 2512133..2513632 (-) 1500 WP_130459668.1 ammonium transporter -
  AZSP09_RS11760 (AZSP09_23260) glnK 2513646..2513984 (-) 339 WP_014235874.1 P-II family nitrogen regulator -
  AZSP09_RS11765 (AZSP09_23270) - 2514045..2514830 (-) 786 WP_152090140.1 TorF family putative porin -
  AZSP09_RS11770 (AZSP09_23280) - 2515148..2515384 (+) 237 WP_130459667.1 accessory factor UbiK family protein -
  AZSP09_RS11775 (AZSP09_23290) comM 2515469..2516977 (+) 1509 WP_152090141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AZSP09_RS11780 (AZSP09_23300) - 2517045..2518238 (+) 1194 WP_152090142.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53786.70 Da        Isoelectric Point: 7.7771

>NTDB_id=74940 AZSP09_RS11775 WP_152090141.1 2515469..2516977(+) (comM) [Azospira sp. I09]
MPLALVHSRALAGMEAPPVAVEVHLANGLPGFTLVGLPEAEVKEARDRVRAALITSGFEFPAKRVTVNLAPADLPKESGR
YDLAIALGLLAASGQIPAARLDQYEFVGELSLSGELRPVRGVLPMALAAARAARAFVLPLADGAEAAWVRRAHPDTSILP
AASLLAVCAHLHGQELLAEQPEPPPPAPDAYPDLRDVKGQAQAKRALEIAAAGGHSLLFSGPPGTGKSMLAARLPGLLPP
MSEAEALESAAILSLGRQFRPEAFSRRVMRSPHHTSSAIALVGGGAQPRPGEISLAHHGVLFLDELPEFDRRVLEALREP
LESGHIHVSRAASRADFPARFQLVAAMNPCPCGYRGHPRRLCRCTPDQVARYRGRLSGPLLDRIDLLLEVPDLGAEELQA
APDGESSAQVRQRVVLARERQLQRQGVCNARLEGSELEYHCRPDTDGTALLQQAVRRLDLSPRAYHRVLRVARSIADLAA
APQIGAAQVAEALHYRRNETPG

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=74940 AZSP09_RS11775 WP_152090141.1 2515469..2516977(+) (comM) [Azospira sp. I09]
ATGCCCCTCGCCCTCGTCCATAGCCGCGCCCTGGCAGGCATGGAAGCGCCGCCGGTGGCCGTGGAGGTGCACCTGGCCAA
CGGCCTGCCGGGCTTCACCCTGGTGGGCCTGCCGGAAGCGGAGGTGAAGGAGGCCCGGGACCGGGTGCGGGCCGCCCTCA
TCACCAGCGGCTTCGAGTTCCCGGCCAAGCGGGTCACGGTGAACCTGGCCCCGGCCGACCTGCCCAAGGAATCGGGCCGC
TACGACCTGGCCATCGCCCTCGGCCTGCTGGCCGCCTCCGGCCAGATTCCCGCCGCCCGGCTGGACCAGTATGAATTCGT
CGGCGAACTGTCCCTGTCCGGCGAACTGCGCCCGGTGCGCGGCGTCCTGCCCATGGCCCTGGCCGCCGCCCGGGCGGCAC
GGGCCTTCGTCCTGCCCCTGGCCGATGGCGCCGAGGCTGCCTGGGTCCGCCGCGCCCATCCCGACACCTCCATCCTCCCC
GCTGCCAGCCTGCTGGCGGTGTGCGCCCACCTGCACGGCCAGGAACTGCTGGCGGAACAGCCGGAACCGCCGCCCCCGGC
GCCGGACGCCTACCCGGACCTGCGCGACGTCAAGGGCCAGGCCCAGGCCAAGCGGGCCCTGGAGATCGCCGCCGCCGGCG
GCCATTCGCTCCTTTTCAGCGGCCCGCCCGGCACCGGCAAGTCCATGCTGGCGGCGCGCCTGCCCGGCCTGCTGCCGCCC
ATGAGCGAGGCGGAAGCCCTGGAATCGGCCGCCATCCTCTCTCTGGGGCGCCAGTTCCGCCCCGAGGCCTTCTCCCGCCG
CGTCATGCGCAGCCCCCACCACACCTCCTCGGCCATCGCCCTGGTCGGCGGCGGGGCCCAGCCCCGGCCCGGGGAGATTT
CCCTGGCCCACCACGGCGTGCTGTTCCTCGACGAACTGCCCGAGTTCGACCGCCGGGTCCTGGAGGCCCTGCGCGAACCC
CTGGAAAGCGGCCACATCCATGTTTCCCGGGCCGCCTCCCGGGCCGATTTCCCTGCCCGCTTCCAGCTGGTGGCGGCCAT
GAATCCCTGTCCCTGCGGCTATCGGGGCCATCCCCGGCGGCTCTGCCGCTGCACCCCGGACCAGGTGGCCCGCTACCGGG
GGCGCCTCTCCGGCCCCCTGCTGGACCGCATCGACCTGCTGCTGGAAGTGCCCGACCTGGGGGCCGAGGAACTGCAGGCC
GCCCCGGACGGGGAAAGTTCGGCCCAGGTGCGGCAGCGGGTGGTCCTGGCCCGGGAGCGGCAGTTGCAGCGCCAGGGCGT
CTGCAACGCCCGGCTCGAGGGCAGCGAACTGGAGTACCATTGCCGGCCGGACACCGACGGGACCGCTCTGCTGCAACAGG
CGGTGCGTCGCCTCGACCTGTCGCCCCGGGCCTACCACCGGGTCCTGCGGGTGGCCCGCAGCATCGCCGACCTGGCCGCA
GCGCCGCAGATCGGCGCCGCCCAGGTGGCCGAAGCCCTGCATTACCGCCGCAACGAAACTCCCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5H2Z183

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.315

99.402

0.57
  comM Vibrio campbellii strain DS40M4

56.112

99.402

0.558
  comM Haemophilus influenzae Rd KW20

53.77

100

0.54
  comM Glaesserella parasuis strain SC1401

51.587

100

0.518
  comM Legionella pneumophila str. Paris

49.008

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.008

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.442

Multiple sequence alignment