Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PAE60_RS12865 Genome accession   NZ_CP123197
Coordinates   2406079..2406708 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain C-SRM-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2401079..2411708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAE60_RS12850 (PAE60_012850) helD 2401321..2403375 (-) 2055 WP_000420536.1 DNA helicase IV -
  PAE60_RS12855 (PAE60_012855) yccF 2403498..2403944 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PAE60_RS12860 (PAE60_012860) yccS 2403954..2406116 (+) 2163 WP_000875023.1 YccS family putative transporter -
  PAE60_RS12865 (PAE60_012865) sxy/tfoX 2406079..2406708 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PAE60_RS12870 (PAE60_012870) sulA 2406927..2407436 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PAE60_RS12875 (PAE60_012875) ompA 2407793..2408845 (+) 1053 WP_001361736.1 porin OmpA -
  PAE60_RS12880 (PAE60_012880) matP 2408921..2409373 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PAE60_RS12885 (PAE60_012885) ycbZ 2409559..2411319 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=749290 PAE60_RS12865 WP_000839153.1 2406079..2406708(-) (sxy/tfoX) [Escherichia coli strain C-SRM-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=749290 PAE60_RS12865 WP_000839153.1 2406079..2406708(-) (sxy/tfoX) [Escherichia coli strain C-SRM-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1