Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OHK33_RS19085 Genome accession   NZ_CP109770
Coordinates   4273580..4274110 (-) Length   176 a.a.
NCBI ID   WP_336869266.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain T25-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4268580..4279110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHK33_RS19060 (OHK33_19040) - 4268989..4269420 (+) 432 WP_181845941.1 carboxymuconolactone decarboxylase family protein -
  OHK33_RS19065 (OHK33_19045) - 4269507..4270121 (+) 615 WP_182100587.1 hypothetical protein -
  OHK33_RS19070 (OHK33_19050) - 4270182..4270772 (-) 591 WP_350316123.1 hypothetical protein -
  OHK33_RS19075 (OHK33_19055) - 4270833..4271291 (-) 459 WP_015841651.1 GNAT family N-acetyltransferase -
  OHK33_RS19080 (OHK33_19060) - 4271504..4273330 (-) 1827 WP_350316124.1 amidohydrolase -
  OHK33_RS19085 (OHK33_19065) ssb 4273580..4274110 (-) 531 WP_336869266.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OHK33_RS19090 (OHK33_19070) uvrA 4274363..4277197 (+) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  OHK33_RS19095 (OHK33_19075) - 4277214..4277633 (+) 420 WP_182100590.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OHK33_RS19100 (OHK33_19080) - 4278016..4278873 (+) 858 WP_350316125.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18815.79 Da        Isoelectric Point: 5.2456

>NTDB_id=749143 OHK33_RS19085 WP_336869266.1 4273580..4274110(-) (ssb) [Pectobacterium aroidearum strain T25-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=749143 OHK33_RS19085 WP_336869266.1 4273580..4274110(-) (ssb) [Pectobacterium aroidearum strain T25-1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCAACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAACTAGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGTCAGCAGCAAGGCGGTTGGGGAC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAACAGCGTCCTGCACAAAACAGCGCTCCG
GCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

47.159

100

0.472
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369