Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OHK33_RS16370 Genome accession   NZ_CP109770
Coordinates   3667416..3668942 (-) Length   508 a.a.
NCBI ID   WP_350315965.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain T25-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3662416..3673942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHK33_RS16345 (OHK33_16335) ytfR 3662572..3664092 (+) 1521 WP_350315962.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  OHK33_RS16350 (OHK33_16340) ytfT 3664079..3665089 (+) 1011 WP_350315963.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  OHK33_RS16355 (OHK33_16345) yjfF 3665089..3666051 (+) 963 WP_350315964.1 galactofuranose ABC transporter, permease protein YjfF -
  OHK33_RS16360 (OHK33_16350) hdfR 3666073..3666900 (-) 828 WP_015842127.1 HTH-type transcriptional regulator HdfR -
  OHK33_RS16365 (OHK33_16355) - 3667021..3667359 (+) 339 WP_014701822.1 DUF413 domain-containing protein -
  OHK33_RS16370 (OHK33_16360) comM 3667416..3668942 (-) 1527 WP_350315965.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OHK33_RS16375 (OHK33_16365) ilvL 3669350..3669448 (+) 99 WP_071531109.1 ilv operon leader peptide -
  OHK33_RS16380 (OHK33_16370) ilvG 3669589..3671235 (+) 1647 WP_350315966.1 acetolactate synthase 2 catalytic subunit -
  OHK33_RS16385 (OHK33_16375) ilvM 3671274..3671534 (+) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  OHK33_RS16390 (OHK33_16380) - 3671561..3672487 (+) 927 WP_015842124.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55482.10 Da        Isoelectric Point: 6.9672

>NTDB_id=749139 OHK33_RS16370 WP_350315965.1 3667416..3668942(-) (comM) [Pectobacterium aroidearum strain T25-1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRK
RIERKHLAEALSYRSMDRLLIQLHRSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=749139 OHK33_RS16370 WP_350315965.1 3667416..3668942(-) (comM) [Pectobacterium aroidearum strain T25-1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCCTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAACTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAGTCAGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAAGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCTATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCATAGTTCTTCTATGGCCGCACTCGTGGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCGC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAAAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGCGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGTTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACAATCGCTGACCTCGGCGATCGAAAG
AGAATAGAGAGAAAACATCTTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.032

99.606

0.638
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.699

98.622

0.5
  comM Legionella pneumophila strain ERS1305867

50.699

98.622

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.14

99.803

0.47