Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OHU75_RS13555 Genome accession   NZ_CP109761
Coordinates   2519630..2520130 (-) Length   166 a.a.
NCBI ID   WP_013059914.1    Uniprot ID   A0A0B6A5N1
Organism   Priestia megaterium strain P-NA14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2514630..2525130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU75_RS13535 (OHU75_13535) rplI 2515785..2516234 (-) 450 WP_016765987.1 50S ribosomal protein L9 -
  OHU75_RS13540 (OHU75_13540) - 2516231..2518204 (-) 1974 WP_028409759.1 DHH family phosphoesterase -
  OHU75_RS13545 (OHU75_13545) - 2518241..2519185 (-) 945 WP_028409760.1 YybS family protein -
  OHU75_RS13550 (OHU75_13550) rpsR 2519324..2519563 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  OHU75_RS13555 (OHU75_13555) ssbA 2519630..2520130 (-) 501 WP_013059914.1 single-stranded DNA-binding protein Machinery gene
  OHU75_RS13560 (OHU75_13560) rpsF 2520179..2520466 (-) 288 WP_013059915.1 30S ribosomal protein S6 -
  OHU75_RS13565 (OHU75_13565) ychF 2520656..2521756 (-) 1101 WP_013059916.1 redox-regulated ATPase YchF -
  OHU75_RS13570 (OHU75_13570) - 2521927..2522124 (-) 198 WP_013059917.1 DUF951 domain-containing protein -
  OHU75_RS13575 (OHU75_13575) - 2522139..2523032 (-) 894 WP_028409761.1 mechanosensitive ion channel family protein -
  OHU75_RS13580 (OHU75_13580) - 2523100..2524113 (-) 1014 WP_028409762.1 membrane protein -
  OHU75_RS13585 (OHU75_13585) yyaC 2524200..2524820 (+) 621 WP_028409763.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18132.76 Da        Isoelectric Point: 4.6529

>NTDB_id=749059 OHU75_RS13555 WP_013059914.1 2519630..2520130(-) (ssbA) [Priestia megaterium strain P-NA14]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=749059 OHU75_RS13555 WP_013059914.1 2519630..2520130(-) (ssbA) [Priestia megaterium strain P-NA14]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAATTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGCGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAATTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCA
GATGACGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6A5N1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.765
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Vibrio cholerae strain A1552

33.889

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367