Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OI984_RS10905 Genome accession   NZ_CP109753
Coordinates   2211899..2212423 (-) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain 2017-45-131-01A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2206899..2217423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OI984_RS10880 (OI984_10880) - 2207418..2208089 (-) 672 WP_023326506.1 glutathione S-transferase -
  OI984_RS10885 (OI984_10885) soxR 2208464..2208922 (-) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  OI984_RS10890 (OI984_10890) soxS 2209021..2209347 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  OI984_RS10895 (OI984_10895) - 2209354..2210919 (-) 1566 WP_023293514.1 EAL domain-containing protein -
  OI984_RS10900 (OI984_10900) - 2211555..2211836 (+) 282 WP_008503385.1 YjcB family protein -
  OI984_RS10905 (OI984_10905) ssb 2211899..2212423 (-) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OI984_RS10910 (OI984_10910) uvrA 2212675..2215497 (+) 2823 WP_008503383.1 excinuclease ABC subunit UvrA -
  OI984_RS10915 (OI984_10915) - 2215501..2215854 (-) 354 WP_045352851.1 MmcQ/YjbR family DNA-binding protein -
  OI984_RS10920 (OI984_10920) - 2215857..2216273 (-) 417 WP_045352853.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OI984_RS10925 (OI984_10925) aphA 2216387..2217100 (-) 714 WP_021242762.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=748974 OI984_RS10905 WP_008503384.1 2211899..2212423(-) (ssb) [Enterobacter roggenkampii strain 2017-45-131-01A]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=748974 OI984_RS10905 WP_008503384.1 2211899..2212423(-) (ssb) [Enterobacter roggenkampii strain 2017-45-131-01A]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368