Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAY67_RS08535 Genome accession   NZ_CP123160
Coordinates   1769956..1770558 (-) Length   200 a.a.
NCBI ID   WP_411888952.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BE-MSSA8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1764956..1775558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY67_RS08515 (QAY67_08540) yajC 1766452..1766712 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  QAY67_RS08520 (QAY67_08545) tgt 1766731..1767870 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QAY67_RS08525 (QAY67_08550) queA 1767893..1768918 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAY67_RS08530 (QAY67_08555) ruvB 1768920..1769924 (-) 1005 WP_001005769.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAY67_RS08535 (QAY67_08560) ruvA 1769956..1770558 (-) 603 WP_411888952.1 Holliday junction branch migration protein RuvA Machinery gene
  QAY67_RS08540 (QAY67_08565) - 1770572..1771027 (-) 456 WP_000368902.1 ACT domain-containing protein -
  QAY67_RS08545 (QAY67_08570) obgE 1771040..1772332 (-) 1293 WP_000496100.1 GTPase ObgE -
  QAY67_RS08550 (QAY67_08575) rpmA 1773083..1773367 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  QAY67_RS08555 (QAY67_08580) - 1773379..1773699 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QAY67_RS08560 (QAY67_08585) rplU 1773705..1774013 (-) 309 WP_000457384.1 50S ribosomal protein L21 -
  QAY67_RS08565 (QAY67_08590) mreD 1774249..1774779 (-) 531 WP_001259923.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22276.48 Da        Isoelectric Point: 6.0240

>NTDB_id=748877 QAY67_RS08535 WP_411888952.1 1769956..1770558(-) (ruvA) [Staphylococcus aureus strain BE-MSSA8]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKIEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=748877 QAY67_RS08535 WP_411888952.1 1769956..1770558(-) (ruvA) [Staphylococcus aureus strain BE-MSSA8]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAATTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.211

99.5

0.42