Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OI907_RS13550 Genome accession   NZ_CP109692
Coordinates   2756375..2757895 (-) Length   506 a.a.
NCBI ID   WP_033146920.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 2017-45-80     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2751375..2762895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OI907_RS13540 (OI907_13525) hdfR 2755066..2755887 (-) 822 WP_023309659.1 HTH-type transcriptional regulator HdfR -
  OI907_RS13545 (OI907_13530) - 2756006..2756344 (+) 339 WP_023309658.1 DUF413 domain-containing protein -
  OI907_RS13550 (OI907_13535) comM 2756375..2757895 (-) 1521 WP_033146920.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OI907_RS13555 (OI907_13540) ilvL 2758236..2758334 (+) 99 WP_001311244.1 ilv operon leader peptide -
  OI907_RS13560 (OI907_13545) ilvX 2758421..2758471 (+) 51 WP_166792073.1 peptide IlvX -
  OI907_RS13565 (OI907_13550) ilvG 2758474..2760120 (+) 1647 WP_033146919.1 acetolactate synthase 2 catalytic subunit -
  OI907_RS13570 (OI907_13555) ilvM 2760117..2760380 (+) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  OI907_RS13575 (OI907_13560) ilvE 2760399..2761328 (+) 930 WP_023309654.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54991.93 Da        Isoelectric Point: 6.8204

>NTDB_id=748846 OI907_RS13550 WP_033146920.1 2756375..2757895(-) (comM) [Enterobacter asburiae strain 2017-45-80]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLINSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCNDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=748846 OI907_RS13550 WP_033146920.1 2756375..2757895(-) (comM) [Enterobacter asburiae strain 2017-45-80]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATTTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCCCTTGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGGCCGCCAGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAATTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAACTGCCTGAATTTGAGCGCCGTGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACCAGAGCCAAAATAAGCTATCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACACCAGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACACGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCACTTAATGTTGAGGATGCGGGATGGCTGGAGGAGACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACCATTGCTGACGTAGAGGGGTGCAATGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437