Detailed information NTG0074881

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: HVMH_RS02530
• Genome accession: NZ_AP020335
• Coordinates: 541454..542605 (-)
• Length: 383 a.a.
• NCBI ID: WP_051623159.1
• Uniprot ID: -
• Organism: Hydrogenovibrio marinus strain MH-110
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 536454..547605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HVMH_RS02515 (HVMH_0496)	-	538405..539241 (+)	837	WP_155837708.1	tetratricopeptide repeat protein	-
HVMH_RS02520 (HVMH_0497)	-	539234..540385 (+)	1152	WP_051623158.1	murein L,D-transpeptidase family protein	-
HVMH_RS02525 (HVMH_0498)	-	540523..541449 (-)	927	WP_035629127.1	M14 family zinc carboxypeptidase	-
HVMH_RS02530 (HVMH_0499)	pilU	541454..542605 (-)	1152	WP_051623159.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
HVMH_RS02535 (HVMH_0500)	pilT	542610..543647 (-)	1038	WP_029907579.1	type IV pilus twitching motility protein PilT	Machinery gene
HVMH_RS02540 (HVMH_0501)	-	543687..544145 (-)	459	WP_035629133.1	DNA polymerase III subunit chi	-
HVMH_RS02545 (HVMH_0502)	-	544178..545659 (-)	1482	WP_029907583.1	leucyl aminopeptidase	-
HVMH_RS02550 (HVMH_0503)	lptF	545791..546909 (+)	1119	WP_051623160.1	LPS export ABC transporter permease LptF	-

Sequence

Protein

• Length: 383 a.a.
• Molecular weight: 42692.50 Da
• Isoelectric Point: 4.9314

>NTDB_id=74881 HVMH_RS02530 WP_051623159.1 541454..542605(-) (pilU) [Hydrogenovibrio marinus strain MH-110]
MLATNPQTLSQIQTLLSAFVQQGGSDLFITQGCAISMKKDGQLIPMTQGELSPDTCKQLVLGLMTTAQQQQFLATKESNF
AYRLADGARFRVNAFFQQGYVGSVIRMIRSDIPDFAELNLPDILTEVIQEKRGLILFVGATGSGKSSSMASLIDYRNHHS
QGHIITIEDPIEFIHPHGKCLITQREVGIDTDSYDEALQNTLRQAPDVIQIGEIRTQETMEHALNFAETGHLCLSTLHAN
NANQAIERIVNFFPEARRAQLLMDLSLNLKAIVSQRLIPKQDDGRIAAVEIMLNTPRIADLIFKGKITELKEAMKQSAEP
GMQTFDQALFTLYEEGKISYEDTLRNADSLNDLRLKLKLESQRFAQEATNEDNTSSNLSLQDS

Nucleotide

• Length: 1152 bp

>NTDB_id=74881 HVMH_RS02530 WP_051623159.1 541454..542605(-) (pilU) [Hydrogenovibrio marinus strain MH-110]
ATGCTGGCAACCAACCCACAAACTCTTTCCCAAATCCAGACACTGCTGTCGGCATTTGTTCAGCAAGGCGGTTCGGATTT
GTTCATCACCCAGGGTTGCGCCATCTCCATGAAAAAAGATGGTCAATTGATTCCCATGACACAAGGGGAACTCTCTCCGG
ATACCTGCAAACAGCTGGTTCTGGGATTAATGACCACCGCACAGCAACAGCAGTTTCTGGCGACTAAAGAAAGCAACTTT
GCCTACCGCCTTGCCGATGGCGCTCGTTTTAGGGTTAATGCGTTTTTCCAACAAGGCTATGTCGGCAGCGTTATCCGAAT
GATTCGCAGTGACATCCCAGACTTCGCAGAGTTGAACCTGCCTGACATACTGACCGAAGTCATTCAGGAAAAGCGTGGGC
TCATTCTGTTTGTCGGCGCTACTGGCTCCGGTAAATCAAGCTCTATGGCGAGTTTGATCGATTACCGTAACCACCACTCT
CAAGGTCATATCATCACCATTGAAGATCCGATTGAGTTCATCCACCCTCACGGCAAATGCCTGATCACCCAAAGGGAGGT
CGGCATTGATACCGACTCTTATGATGAGGCTTTGCAAAATACGCTTCGACAAGCACCCGATGTGATTCAAATCGGTGAAA
TTCGCACTCAGGAAACCATGGAGCACGCGTTGAATTTTGCGGAAACAGGACACCTGTGTTTGTCGACACTTCATGCGAAC
AATGCCAATCAAGCCATTGAACGTATCGTCAACTTCTTTCCAGAAGCACGCCGCGCTCAACTGTTGATGGACTTGTCATT
GAACTTGAAAGCCATAGTTTCCCAAAGATTGATCCCAAAACAAGATGATGGCCGCATTGCAGCGGTAGAGATTATGCTGA
ACACACCGCGTATTGCTGATTTGATTTTCAAAGGCAAAATCACCGAACTAAAAGAGGCGATGAAGCAATCTGCCGAACCG
GGCATGCAAACCTTTGACCAAGCGTTGTTTACGCTTTACGAAGAAGGGAAAATCAGCTACGAAGACACCCTTCGCAATGC
GGACTCCTTGAATGATTTGCGCTTAAAACTCAAATTAGAAAGCCAACGTTTTGCACAGGAAGCCACAAACGAGGATAATA
CTTCCTCTAACTTAAGCCTTCAGGACTCTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (19-280)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	55.882	97.65	0.546
pilU	Acinetobacter baylyi ADP1	56	91.384	0.512
pilU	Vibrio cholerae strain A1552	54.286	91.384	0.496
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.136	87.99	0.371