Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVMH_RS01845 Genome accession   NZ_AP020335
Coordinates   398862..399434 (+) Length   190 a.a.
NCBI ID   WP_035628908.1    Uniprot ID   -
Organism   Hydrogenovibrio marinus strain MH-110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 393862..404434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVMH_RS01835 (HVMH_0366) uvrA 394342..397155 (-) 2814 WP_029910463.1 excinuclease ABC subunit UvrA -
  HVMH_RS01840 (HVMH_0367) - 397341..398729 (+) 1389 WP_029910460.1 MFS transporter -
  HVMH_RS01845 (HVMH_0368) ssb 398862..399434 (+) 573 WP_035628908.1 single-stranded DNA-binding protein Machinery gene
  HVMH_RS01850 (HVMH_0369) - 399643..400263 (+) 621 WP_029910454.1 hypothetical protein -
  HVMH_RS01855 (HVMH_0370) ispB 400279..401244 (-) 966 WP_029910451.1 octaprenyl diphosphate synthase -
  HVMH_RS01860 (HVMH_0371) rplU 401582..401896 (+) 315 WP_029910447.1 50S ribosomal protein L21 -
  HVMH_RS01865 (HVMH_0372) rpmA 401985..402245 (+) 261 WP_029910443.1 50S ribosomal protein L27 -
  HVMH_RS01870 (HVMH_0373) cgtA 402407..403468 (+) 1062 WP_029910439.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20460.74 Da        Isoelectric Point: 5.1961

>NTDB_id=74880 HVMH_RS01845 WP_035628908.1 398862..399434(+) (ssb) [Hydrogenovibrio marinus strain MH-110]
MVRGVNKVILVGTLGRDPEMKYAANGNAIANLSIATSENWTDKNSGQKQEKTEWHRVVIFGKLAEIAGQYLTKGSQVYLE
GKLQTRKWQDQNSGQDRYSTEVVVDFSGQMQMLGGGNRQGDAAFGQAPGGMSPGMGGQPSSMPPAGQGFAPQQATPNYGQ
APQPMQHQAPPMQQAPAYPENDFGDDDVPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=74880 HVMH_RS01845 WP_035628908.1 398862..399434(+) (ssb) [Hydrogenovibrio marinus strain MH-110]
ATCGTGAGAGGAGTGAATAAAGTCATTTTGGTTGGAACCCTTGGACGGGATCCAGAAATGAAATATGCGGCGAATGGCAA
CGCGATTGCCAATTTAAGCATTGCGACATCTGAAAACTGGACAGATAAAAACTCCGGGCAGAAGCAAGAGAAAACCGAAT
GGCACAGGGTTGTTATTTTTGGAAAGCTTGCTGAAATCGCAGGACAGTATCTCACGAAGGGTTCTCAAGTTTATCTTGAA
GGCAAGTTGCAGACCCGTAAATGGCAAGATCAAAACTCTGGGCAAGATCGTTACTCAACGGAAGTTGTGGTTGATTTTAG
TGGACAAATGCAAATGCTTGGTGGTGGTAATCGTCAAGGAGATGCAGCATTTGGACAAGCTCCAGGCGGTATGTCACCAG
GAATGGGTGGGCAACCTTCTTCTATGCCACCAGCAGGACAAGGGTTTGCGCCACAACAAGCTACGCCTAACTATGGGCAA
GCACCGCAGCCGATGCAACATCAAGCCCCGCCGATGCAACAAGCACCAGCCTATCCTGAAAATGACTTTGGTGACGATGA
CGTTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.477

100

0.574
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.489
  ssb Neisseria meningitidis MC58

44.92

98.421

0.442
  ssb Neisseria gonorrhoeae MS11

43.75

100

0.442

Multiple sequence alignment