Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OF800_RS02835 Genome accession   NZ_CP109636
Coordinates   552237..553241 (+) Length   334 a.a.
NCBI ID   WP_264308539.1    Uniprot ID   A0AA46TWL0
Organism   Lactococcus garvieae strain Alexii-6_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 547237..558241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF800_RS02815 (OF800_02815) - 547624..548328 (+) 705 WP_004258993.1 Bax inhibitor-1/YccA family protein -
  OF800_RS02820 (OF800_02820) - 548381..549205 (-) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -
  OF800_RS02825 (OF800_02825) - 549562..550983 (+) 1422 WP_264308537.1 NCS2 family permease -
  OF800_RS02830 (OF800_02830) - 551060..552160 (+) 1101 WP_264308538.1 YdcF family protein -
  OF800_RS02835 (OF800_02835) coiA 552237..553241 (+) 1005 WP_264308539.1 competence protein CoiA family protein Machinery gene
  OF800_RS02840 (OF800_02840) pepF 553225..555030 (+) 1806 WP_264308540.1 oligoendopeptidase F Regulator
  OF800_RS02845 (OF800_02845) - 555030..555713 (+) 684 WP_264308541.1 O-methyltransferase -
  OF800_RS02850 (OF800_02850) - 555811..556719 (+) 909 WP_017370843.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39962.93 Da        Isoelectric Point: 8.8173

>NTDB_id=748690 OF800_RS02835 WP_264308539.1 552237..553241(+) (coiA) [Lactococcus garvieae strain Alexii-6_2]
MLIALDKDGKTINLLDSTSINGPFYCPACKTPLRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLSLYQWFKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGRDLWLKNTLSPLQKNLLYYSAERGF
YFWELDWKRKKLRLKSLIYQDLKGRPIYLTEEFDFFQESLLDLLRQPFRKGKNLSLDVPKQEELQLFVQKQLYYQVPKWL
KVQEKYYEQGRNLLDLNWKKSYWSPPGLNLLTFDFADNTRESFFQVDISLEEYYHSFYESFQLKEHERLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=748690 OF800_RS02835 WP_264308539.1 552237..553241(+) (coiA) [Lactococcus garvieae strain Alexii-6_2]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTTCTTGACAGCACTTCAATTAATGGCCCTTTTTATTGCCC
CGCCTGTAAGACGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCCTTACAAAATTGTG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTAGGCTTAAAACTCAGCTTATATCAGTGGTTTAAGGAAAAAGAGAAA
GTAGAGCTGGAAAAGTACGTGCCAGAGATTAAGCAAACTGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCGCCCCTCTCTTTGCAACGCTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGGTATTATGTACTTTGGCTTC
AAGGGAGGGACTTGTGGCTTAAGAATACGCTATCTCCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGGAATTGGACTGGAAAAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTAACGGAAGAGTTTGACTTCTTTCAAGAAAGTCTCTTAGACCTCTTACGCCAGCCCTTTCGAAAAGGAAAAAATC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTGTTTGTTCAGAAACAATTGTATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATTTGCTGGACCTTAACTGGAAGAAGAGTTACTGGAGTCCTCCGGG
CTTGAACTTGTTGACCTTTGACTTTGCCGATAATACGCGAGAAAGCTTTTTTCAAGTAGACATTTCCTTGGAAGAATATT
ACCACAGTTTCTACGAAAGTTTTCAGTTAAAAGAACATGAAAGACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.84

97.605

0.506
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

40.854

98.204

0.401