Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OF800_RS02840 Genome accession   NZ_CP109636
Coordinates   553225..555030 (+) Length   601 a.a.
NCBI ID   WP_264308540.1    Uniprot ID   -
Organism   Lactococcus garvieae strain Alexii-6_2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 548225..560030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF800_RS02820 (OF800_02820) - 548381..549205 (-) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -
  OF800_RS02825 (OF800_02825) - 549562..550983 (+) 1422 WP_264308537.1 NCS2 family permease -
  OF800_RS02830 (OF800_02830) - 551060..552160 (+) 1101 WP_264308538.1 YdcF family protein -
  OF800_RS02835 (OF800_02835) coiA 552237..553241 (+) 1005 WP_264308539.1 competence protein CoiA family protein Machinery gene
  OF800_RS02840 (OF800_02840) pepF 553225..555030 (+) 1806 WP_264308540.1 oligoendopeptidase F Regulator
  OF800_RS02845 (OF800_02845) - 555030..555713 (+) 684 WP_264308541.1 O-methyltransferase -
  OF800_RS02850 (OF800_02850) - 555811..556719 (+) 909 WP_017370843.1 peptidyl-prolyl cis-trans isomerase -
  OF800_RS02855 (OF800_02855) alaS 556974..559592 (+) 2619 WP_264308542.1 alanine--tRNA ligase -
  OF800_RS02860 (OF800_02860) - 559734..559931 (-) 198 WP_264308543.1 hypothetical protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69761.47 Da        Isoelectric Point: 4.8156

>NTDB_id=748691 OF800_RS02840 WP_264308540.1 553225..555030(+) (pepF) [Lactococcus garvieae strain Alexii-6_2]
MAKKRDKIAENLTWDLSTVFENDAAWELELKRVSEKLETVNAYEGHLLDSAQSLLEITEMELEISRAVEKVYVYASMKHD
QDTQVSLYQEYEAKATNLYAKFGESFAFYEPEFLALTPERYASFRREEPKLERYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERKVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLPLLHRYIKLREQILGLEDDLKMYDVYTPLSDLDYKFNYPEAV
EKAQEVLQILGPEYAHHVKKAFDERWIDVAENIGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAASTDEKVRFSILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYADLNEKYYGLPARENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGTDAREKYLTYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=748691 OF800_RS02840 WP_264308540.1 553225..555030(+) (pepF) [Lactococcus garvieae strain Alexii-6_2]
ATGGCAAAAAAACGTGATAAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGAGTTTCGGAAAAATTAGAGACGGTAAACGCCTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATGGAGCTAGAAATCTCGCGTGCTGTGGAAAAGGTTTATGTCTATGCCTCAATGAAGCATGAC
CAAGATACGCAAGTGAGCCTTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGTTTGGTGAAAGCTTTGC
TTTTTACGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGCAAGTTTTAGAAGAGAAGAACCTAAACTGGAACGCT
ATTCCCATATGTTTGAACGCCTTTTTGCTAAAAAGGAGCATATTTTAAGTCCAAAAGAGGAAAAACTTTTAGCCAGTGCG
AGTGAGATTTTTGGTGCTGCGGCCGAAACCTTTGAAATTTTTGACAATGCTGATATTGAACTTCCGATGATTAAAGATGA
AAAAGGACAGGAAGTACAGCTGACACATGGCAATTATATCTCGCTCATGGAAAGTAAGGAGCGTAAGGTACGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAACACACTTATGCTAAAACGCTACAAACAAATGTCAAAGTCCAT
AATTTTAAGGCAAAGATGCGGGGCTACCATTCAGCTCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTCTA
CGATAAGCTCTTAGAGTCTGTCAATAAATATTTGCCTCTTTTACATCGCTATATTAAATTGCGTGAACAGATTTTAGGCT
TAGAAGATGATTTAAAGATGTATGATGTTTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACCCCGAGGCAGTA
GAGAAAGCCCAAGAAGTTCTTCAAATTTTGGGCCCTGAATATGCGCACCATGTAAAAAAAGCTTTTGATGAGCGTTGGAT
TGATGTGGCAGAAAATATCGGTAAACGTTCGGGTGCTTACTCAGGTGGATGCTATGATACAAATGCTTTTATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGTCACAGTATGCATTCCACATTTACACGGGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGCGTCGACAGATGAAAAAGTGCGGTTTTCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTTCGTCAAAGTCAATTTGCTGAATTTGAACATGAAATACATAAAGCTGATCAAGAAGGAAAAGTTTTGACCAGTGAA
TTCATGAACCAGCTTTATGCAGATCTTAATGAAAAATACTATGGTTTACCTGCCCGAGAAAATCCTGAAATTCAGTATGA
GTGGGCCCGCATTCCGCACTTCTATTACAACTATTATGTCTTCCAATATGCTACTGGCTTTGCCGCAGCAACTTATCTTG
CTGAGGCTATCGTTAATGGTGGGACAGATGCGCGTGAAAAATACCTCACTTATCTCAAAGCCGGATCAAGTGATTATCCC
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.058

100

0.651