Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | K5706_RS01840 | Genome accession | NZ_AP019849 |
| Coordinates | 392306..392836 (+) | Length | 176 a.a. |
| NCBI ID | WP_221070821.1 | Uniprot ID | - |
| Organism | Vibrio alfacsensis strain 04Ya249 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 387306..397836
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5706_RS01825 (VA249_03030) | uvrA | 387351..390173 (-) | 2823 | WP_221070820.1 | excinuclease ABC subunit UvrA | - |
| K5706_RS01830 (VA249_03040) | galU | 390352..391224 (-) | 873 | WP_211915879.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| K5706_RS01835 (VA249_03050) | qstR | 391384..392028 (-) | 645 | WP_128810046.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| K5706_RS01840 (VA249_03060) | ssb | 392306..392836 (+) | 531 | WP_221070821.1 | single-stranded DNA-binding protein | Machinery gene |
| K5706_RS01845 (VA249_03070) | csrD | 393053..395062 (+) | 2010 | WP_221070823.1 | RNase E specificity factor CsrD | - |
| K5706_RS01850 (VA249_03080) | - | 395074..396522 (+) | 1449 | WP_221070825.1 | MSHA biogenesis protein MshI | - |
| K5706_RS01855 (VA249_03090) | gspM | 396519..397169 (+) | 651 | WP_221070827.1 | type II secretion system protein GspM | - |
| K5706_RS01860 (VA249_03100) | - | 397162..397494 (+) | 333 | WP_221070829.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19676.73 Da Isoelectric Point: 4.8950
>NTDB_id=74383 K5706_RS01840 WP_221070821.1 392306..392836(+) (ssb) [Vibrio alfacsensis strain 04Ya249]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRAQGGAPMGGQQQQQQGSWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRAQGGAPMGGQQQQQQGSWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=74383 K5706_RS01840 WP_221070821.1 392306..392836(+) (ssb) [Vibrio alfacsensis strain 04Ya249]
ATGGCCAGCCGTGGAATTAACAAAGTTATCTTAGTGGGAAATCTTGGCAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATTACTATTGCTACCTCTGACTCATGGCGCGATAAAGCGACTGGTGAACAGCGCGAAAAAACGG
AATGGCACCGTGTAGTGCTATTCGGTAAGCTAGCTGAAGTAGCAGGTGAATACCTACGTAAAGGCTCACAAGTTTACATT
GAAGGTCAATTGCAAACACGTAAGTGGCAAAACCAACAAGGCCAAGATCAGTACACAACAGAAGTTGTAGTACAAGGTTT
TAATGGCGTTATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCAATGGGTGGTCAACAACAGCAGCAACAAGGTA
GTTGGGGTCAGCCACAACAACCTGCACAGCAGCAGTACAATGCACCACAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAATGAGCCACCAATGGATTTCGATGACGACATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATCTTAGTGGGAAATCTTGGCAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATTACTATTGCTACCTCTGACTCATGGCGCGATAAAGCGACTGGTGAACAGCGCGAAAAAACGG
AATGGCACCGTGTAGTGCTATTCGGTAAGCTAGCTGAAGTAGCAGGTGAATACCTACGTAAAGGCTCACAAGTTTACATT
GAAGGTCAATTGCAAACACGTAAGTGGCAAAACCAACAAGGCCAAGATCAGTACACAACAGAAGTTGTAGTACAAGGTTT
TAATGGCGTTATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCAATGGGTGGTCAACAACAGCAGCAACAAGGTA
GTTGGGGTCAGCCACAACAACCTGCACAGCAGCAGTACAATGCACCACAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAATGAGCCACCAATGGATTTCGATGACGACATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
78.212 |
100 |
0.795 |
| ssb | Glaesserella parasuis strain SC1401 |
56.085 |
100 |
0.602 |
| ssb | Neisseria meningitidis MC58 |
46.328 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.328 |
100 |
0.466 |